Jatropha Genome Database

JcCB0236511.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0236511.10 - phase: 0 
         (386 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009278001 assembled CDS                                       568   e-162
GSVIVT01009276001 assembled CDS                                       565   e-161
GSVIVT01002251001 assembled CDS                                       139   2e-33
GSVIVT01000009001 assembled CDS                                        56   3e-08

>GSVIVT01009278001 assembled CDS
          Length = 387

 Score =  568 bits (1465), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 279/388 (71%), Positives = 320/388 (82%), Gaps = 3/388 (0%)

Query: 1   MILSSSGIRSLIQSFRLGFNIQSKFGA--YFTFRAASSLQQAYQPSTCSDDEYADLDWDN 58
           MI   +  R+LI S R G +  SK  +   FT R A SLQ   +PS  SDDEYAD+DWDN
Sbjct: 1   MISRRACFRNLILSLRTG-STASKLRSSNCFTSRTAPSLQPLVEPSPYSDDEYADVDWDN 59

Query: 59  LGFGLLSTDFMYIMKSSKEGNFEQGNLSRYENIPLSPSAGILNYGQGLFEGTKAYRKENG 118
           LGFGL+ TD+MY  K S+ GNFE+G+LSRY NI LSPSAG+LNYGQGLFEGTKAYR+ENG
Sbjct: 60  LGFGLIPTDYMYTTKCSEGGNFEEGHLSRYGNIELSPSAGVLNYGQGLFEGTKAYRRENG 119

Query: 119 GLLLFRPDLNAIRMNIGAERMCMPSPSIDQFVNAVKQTAIANKRWVPPPGKGTLYIRPLL 178
            L LFRPD NAIRM +GAERMCMPSPSI  FV AVKQTA+ANKRW+PPPGKG+LYIRPLL
Sbjct: 120 RLCLFRPDQNAIRMQVGAERMCMPSPSIHHFVEAVKQTALANKRWIPPPGKGSLYIRPLL 179

Query: 179 MGTGPVLGVAPSPEYTFLVYASPVGNYFKGGFAPLNLYVDDEYHRASRGGAGGVKAISNY 238
           MG+GPVLG+ P+PE TFL+YASPVGNYFK   APLNL++DDEYHRA+RGGAGGVKAI+NY
Sbjct: 180 MGSGPVLGLGPAPECTFLIYASPVGNYFKQVSAPLNLFIDDEYHRATRGGAGGVKAITNY 239

Query: 239 APVLKAITRAKNRGFSDVLYLDSVEKKYLEEVSSCNIFIVKGNVISTPATNGTILPGVTR 298
           +PVLKA +RAK+RGFSDVL+LDSV KK +EEVSSCNIFIVK NVISTPAT GTIL GVTR
Sbjct: 240 SPVLKAQSRAKSRGFSDVLFLDSVNKKNIEEVSSCNIFIVKDNVISTPATGGTILEGVTR 299

Query: 299 KSIIEIAQDQGYKVEERVIPVDELVNADEVFCTGTAVVVAPVGSITYQNKRIEYKTGGGS 358
           KSII+IA D GY+V+ER IPV+E++ ADEVFCTGTAV VA VGSITYQ KR+EYK+G   
Sbjct: 300 KSIIDIALDHGYQVKERCIPVEEVMEADEVFCTGTAVGVAAVGSITYQGKRVEYKSGDRC 359

Query: 359 TSQKLYSTLVGIQTAVIEDKKGWTVEIE 386
            SQ+L S   GIQ   IEDKKGW +EI+
Sbjct: 360 VSQELLSMYTGIQKGHIEDKKGWILEID 387


>GSVIVT01009276001 assembled CDS
          Length = 387

 Score =  565 bits (1455), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 277/388 (71%), Positives = 319/388 (82%), Gaps = 3/388 (0%)

Query: 1   MILSSSGIRSLIQSFRLGFNIQSKFGA--YFTFRAASSLQQAYQPSTCSDDEYADLDWDN 58
           MI   +  R+LIQS R G +  SK  +   +T R A SLQ   + S  SDDEYAD+DWDN
Sbjct: 1   MISRRACFRNLIQSLRTG-STASKLRSSNCYTSRTAPSLQPVVELSPDSDDEYADVDWDN 59

Query: 59  LGFGLLSTDFMYIMKSSKEGNFEQGNLSRYENIPLSPSAGILNYGQGLFEGTKAYRKENG 118
           LGF L  TD+MYI K S   +FE+G+LSRY NI LSPSAG+LNYGQGLFEGTKAYR+ENG
Sbjct: 60  LGFSLRPTDYMYITKCSGGDSFEEGHLSRYGNIELSPSAGVLNYGQGLFEGTKAYRRENG 119

Query: 119 GLLLFRPDLNAIRMNIGAERMCMPSPSIDQFVNAVKQTAIANKRWVPPPGKGTLYIRPLL 178
            L LFRPD NAIRM  GAERMCMPSPSI QFV AVKQTA ANKRW+PPPGKG+LYIRPLL
Sbjct: 120 RLCLFRPDQNAIRMQAGAERMCMPSPSIHQFVEAVKQTAFANKRWIPPPGKGSLYIRPLL 179

Query: 179 MGTGPVLGVAPSPEYTFLVYASPVGNYFKGGFAPLNLYVDDEYHRASRGGAGGVKAISNY 238
           MG+GPVLG+ P+PE TFL+YASPVGNYFK G APLNL++DDEYHRA+RGGAGGVK I+NY
Sbjct: 180 MGSGPVLGLGPAPECTFLIYASPVGNYFKEGLAPLNLFIDDEYHRATRGGAGGVKTITNY 239

Query: 239 APVLKAITRAKNRGFSDVLYLDSVEKKYLEEVSSCNIFIVKGNVISTPATNGTILPGVTR 298
           +PVLKA+TRAK+RGFSDVLYLDSV KK +EEVSSCN+FIVK NVISTPAT GTIL GVTR
Sbjct: 240 SPVLKALTRAKSRGFSDVLYLDSVYKKNIEEVSSCNVFIVKDNVISTPATGGTILEGVTR 299

Query: 299 KSIIEIAQDQGYKVEERVIPVDELVNADEVFCTGTAVVVAPVGSITYQNKRIEYKTGGGS 358
           KSI++IA D GY+V+E+ IPV+E++ ADEVFCTGTAV VA VGSITYQ KR+EYK G   
Sbjct: 300 KSIVDIALDHGYQVKEQCIPVEEVMEADEVFCTGTAVGVAAVGSITYQGKRVEYKMGDQC 359

Query: 359 TSQKLYSTLVGIQTAVIEDKKGWTVEIE 386
            SQ+L+ST +GIQ   IEDKKGW +EI+
Sbjct: 360 VSQELFSTYMGIQKGDIEDKKGWILEID 387


>GSVIVT01002251001 assembled CDS
          Length = 108

 Score =  139 bits (350), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 67/108 (62%), Positives = 86/108 (79%), Gaps = 1/108 (0%)

Query: 280 GNVISTPATNGTILPGVTRKSIIEIAQDQGYKVEERVIPVDELVNADEVFCTGTAVVVAP 339
           GNVISTP+  GTILPG+TRKSII++A+ QG++VEER + VDEL++ADEVFCTGTAVVV+P
Sbjct: 1   GNVISTPSIKGTILPGITRKSIIDVARSQGFQVEERPVSVDELLDADEVFCTGTAVVVSP 60

Query: 340 VGSITYQNKRIEYKTGG-GSTSQKLYSTLVGIQTAVIEDKKGWTVEIE 386
           VGSITY  KR+ Y+  G G  SQ+LYS L  +Q  + ED   WT+E++
Sbjct: 61  VGSITYLGKRVSYQNNGIGVVSQQLYSALTRLQMGLTEDVMNWTMELK 108


>GSVIVT01000009001 assembled CDS
          Length = 975

 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 3/100 (3%)

Query: 244 AITRAKNRGFSDVLYLDSVEKKYLEEVSSCNIFIVKGNVISTPATNGTILPGVTRKSIIE 303
           A     N    D + LD  +  Y+ E ++ NIF+VK   + TP  +   LPG+TR ++++
Sbjct: 841 AKIEGNNANADDAIMLD--KDGYVSETNATNIFLVKKGHVLTPHAD-YCLPGITRATVMD 897

Query: 304 IAQDQGYKVEERVIPVDELVNADEVFCTGTAVVVAPVGSI 343
           +   + + + ER I + E   ADEV+ TGT   ++PV  I
Sbjct: 898 LVVKEKFPLVERRISLSEFHTADEVWTTGTMGELSPVVKI 937