Jatropha Genome Database

JcCB0235721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0235721.10 - phase: 0 /partial
         (530 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016716001 assembled CDS                                       181   9e-46

>GSVIVT01016716001 assembled CDS
          Length = 1011

 Score =  181 bits (458), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 103/195 (52%), Positives = 127/195 (65%), Gaps = 17/195 (8%)

Query: 1   HFADLLAAQFCSLMIREGY-LVEDNIQPKPTQMNIASTSQPIAVGIPPNNSAAEVQKYNE 59
           HFADLLAAQFCSLM REGY L+ED +QPKP +MN+AS++Q  A GI PNNSAAE+Q+Y+E
Sbjct: 812 HFADLLAAQFCSLMNREGYHLMEDRVQPKPARMNLASSNQSNAPGISPNNSAAEMQQYSE 871

Query: 60  AVSAQAPNDI-KPSLSGNASINPSQNLLANARMLPPGNPKALPMSQGLVSAVSMAARXXX 118
             S Q  N++ KP+ SGN  +N SQNLLAN+RMLPPGN +AL +SQGL++ VS+  R   
Sbjct: 872 TASGQPHNEVAKPTNSGNTPLNASQNLLANSRMLPPGNAQALQISQGLLTGVSLPTR--- 928

Query: 119 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSAMMLPSNSLSHLNALGQ 178
                                                    RS++MLP+N LSHL+A+GQ
Sbjct: 929 ------------PQQLNPQPLQQPQQQNPQSLIQQQHSQFQRSSLMLPTNPLSHLSAMGQ 976

Query: 179 NSNMQLGNHMVNKPS 193
           NSNMQLGNHMVNKPS
Sbjct: 977 NSNMQLGNHMVNKPS 991