Jatropha Genome Database

JcCB0234781.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0234781.10 + phase: 0 
         (154 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003974001 assembled CDS                                       122   9e-29

>GSVIVT01003974001 assembled CDS
          Length = 328

 Score =  122 bits (305), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 63/120 (52%), Positives = 74/120 (61%), Gaps = 3/120 (2%)

Query: 27  TRHFTSIATAXXXXXXXXXXXXXXXGNATATTDSIFLKAPNSNAKLDAAPSSSVTMPMSF 86
           T  F+++ATA                  +   DSI +K P+SN + +   ++SVTMPMSF
Sbjct: 26  TLRFSAVATARNPESEGASSSFTFNEKNSDKDDSIHVKGPSSNPRRE---TTSVTMPMSF 82

Query: 87  MTGSIVGKRFYKQVTTREADDGNGWTVMLDYRTLKTPSKRXXXXXXXXXXXXXXXEWEYQ 146
           MTGSIVGKRFYKQ +TREADDGNGWTVMLDYRTLKTPSKR               EWEYQ
Sbjct: 83  MTGSIVGKRFYKQASTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLSLAKAIAAEWEYQ 142