Jatropha Genome Database

JcCB0234681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0234681.10 + phase: 0 /partial
         (152 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012110001 assembled CDS                                       132   7e-32
GSVIVT01026207001 assembled CDS                                       112   7e-26

>GSVIVT01012110001 assembled CDS
          Length = 256

 Score =  132 bits (332), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 77/178 (43%), Positives = 101/178 (56%), Gaps = 28/178 (15%)

Query: 3   MQQIIERYQKVKGTSIPEHDSR------------------------MKRYMGEDMSSIPF 38
           M+QII RYQ+V GT I + D+R                        ++RY G+D+SSI F
Sbjct: 64  MEQIIRRYQRVTGTHISKQDNRVGAIEQLHNEITRMRNETHNLQLSLQRYTGDDLSSIQF 123

Query: 39  XXXXXXXXXXXRSVAKVRNRKNELLQQQLDNLHRKERMLEEENGNMYRWIQDHR--VAME 96
                       S+ KVR RK +LLQQQ+DNL RK +MLE+EN  +  WIQ+ +   AME
Sbjct: 124 KDLEELEQQLEHSIKKVRARKYQLLQQQIDNLQRKAKMLEDENEQICHWIQEKQQVAAME 183

Query: 97  YQHATLEAKPVEHQQVLDQFPFCGE--PSSVLQLGTIHSQIHSYHLQLAQPNLQGSSI 152
            Q   +E KPVE QQV++QFPF GE  P+SVLQL T+    + Y LQ   PNLQ  ++
Sbjct: 184 QQQLGIELKPVEEQQVMEQFPFSGEEQPNSVLQLATLSPHFYPYRLQPTHPNLQDLTL 241


>GSVIVT01026207001 assembled CDS
          Length = 218

 Score =  112 bits (280), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 76/145 (52%), Positives = 89/145 (61%), Gaps = 22/145 (15%)

Query: 1   YRMQQIIERYQKVKGTSIPEHDSR--------------------MKRYMGEDMSSIPFXX 40
           +RM QIIERYQKV GT IPEHDSR                    M+ Y GED+SSIP+  
Sbjct: 62  WRMDQIIERYQKVTGTRIPEHDSREQIYNELTRMRKETSRLQRSMRGYTGEDLSSIPYED 121

Query: 41  XXXXXXXXXRSVAKVRNRKNELLQQQLDNLHRKERMLEEENGNMYRWIQDHRVAMEYQHA 100
                     S  KVR RKN+LLQQQLDNL RKE+MLEEEN  MY WI+++R A++YQ A
Sbjct: 122 LDQLEQQLEHSADKVRARKNQLLQQQLDNLRRKEQMLEEENSKMYHWIKENRAALDYQQA 181

Query: 101 TLEAKPVE-HQQVLDQF-PFCGEPS 123
            +E KPVE H Q+LDQ     GE S
Sbjct: 182 AIEVKPVEHHHQMLDQAETLTGEVS 206