Jatropha Genome Database

JcCB0234411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0234411.10 - phase: 0 /pseudo
         (80 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031958001 assembled CDS                                        87   2e-18

>GSVIVT01031958001 assembled CDS
          Length = 377

 Score = 87.0 bits (214), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/75 (62%), Positives = 49/75 (65%), Gaps = 7/75 (9%)

Query: 1  MSVAELKARHVAATETVNXXXXXXXXXXXXXXXXXXXXXXVAVAGYARAQGKPPVSFGPT 60
          MSVAELK RH+AATETVN                        VAGYARAQGK PV+FGPT
Sbjct: 1  MSVAELKERHMAATETVNSLRERLKQKRLLLLDTD-------VAGYARAQGKSPVTFGPT 53

Query: 61 DLVCCRTLQGHTGKV 75
          DLVCCRTLQGHTGKV
Sbjct: 54 DLVCCRTLQGHTGKV 68