Jatropha Genome Database

JcCB0232511.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0232511.10 + phase: 0 
         (236 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033731001 assembled CDS                                       352   9e-98

>GSVIVT01033731001 assembled CDS
          Length = 606

 Score =  352 bits (903), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 169/237 (71%), Positives = 196/237 (82%), Gaps = 1/237 (0%)

Query: 1   MFEEKRSIXXXXXXXXXXXXXXYCKYYGLQGKNVVAITSGANMNFDKLRVVTELANVGRQ 60
           MFEEKRSI              YCKYYG++G N+VAITSGANMNFD+LR+VTELA+VGRQ
Sbjct: 370 MFEEKRSILEPAGALALAGAEAYCKYYGIKGGNIVAITSGANMNFDRLRLVTELADVGRQ 429

Query: 61  QEAVLATVMPEEPGMFKRFCELVGPMNITEFKYRCNSEKE-AVVLYSVGLHTVSEIEALQ 119
           +EAVLAT++PEEPG FK+FCE+VG MNITEFKYR N  KE A+VLYSVGLHTV E+ A+ 
Sbjct: 430 REAVLATLLPEEPGSFKQFCEMVGHMNITEFKYRYNPHKEKALVLYSVGLHTVLELSAMV 489

Query: 120 QRMESSQLRTYNLTSSDLVKDHLRYLMGGRLNVQNEVLCHFVFPERPGALMKFLDTFSPR 179
           +RMESSQL T NLT+ DLVKDHLR+LMGGR +V+NE+LC FVFPERPG LMKFLDTFSPR
Sbjct: 490 ERMESSQLTTLNLTNDDLVKDHLRHLMGGRSHVENELLCRFVFPERPGTLMKFLDTFSPR 549

Query: 180 WNISLFHYRGQGETGANVLVGIQVPEHEMDEFHSRANSVGYDYDLVTDDDNFQLLMH 236
           WNISLFHYRGQGE GANVLVGIQVPE EM EF  RA+++GY+Y + T +  + LLMH
Sbjct: 550 WNISLFHYRGQGEAGANVLVGIQVPETEMTEFKRRADALGYEYAVETSNKAYLLLMH 606