Jatropha Genome Database

JcCB0231741.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0231741.10 + phase: 0 /partial
         (681 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01034203001 assembled CDS                                       468   e-132

>GSVIVT01034203001 assembled CDS
          Length = 856

 Score =  468 bits (1203), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 222/254 (87%), Positives = 235/254 (92%)

Query: 339 LENLGPGHIIVGPSIIMNGNSTVIVEPNCNAVVTKYGNIKIEIGSNMSTEEVAENVADVV 398
           LENLG GH++ GP+IIMNGNSTVIVEPNC AV+TKYGNIKIEI SN+ T +VAE VADVV
Sbjct: 403 LENLGYGHVMPGPAIIMNGNSTVIVEPNCKAVITKYGNIKIEIQSNLGTVKVAEKVADVV 462

Query: 399 QLSIFNHRFMGIAEQMGRTLQRTSISTNIKERLDFSCALFGPDGGLVANAPHVPVHLGAM 458
           QLSIFNHRFMGIAEQMGRTLQRTSISTNIKERLDFSCALFGPDGGLVANAPHVPVHLGAM
Sbjct: 463 QLSIFNHRFMGIAEQMGRTLQRTSISTNIKERLDFSCALFGPDGGLVANAPHVPVHLGAM 522

Query: 459 SSTVRWQLNYWGDNLKEGDVLVTNHPCAGGSHLPDITVITPVFDKEKLVFFVASRGHHAE 518
           SSTVRWQL YWG+NL EGDVLVTNHPCAGGSHLPDITV+TPVF+  KLVFFVASRGHHAE
Sbjct: 523 SSTVRWQLKYWGNNLNEGDVLVTNHPCAGGSHLPDITVVTPVFNNGKLVFFVASRGHHAE 582

Query: 519 IGGITPGSMPPFSKSIWEEGAAIKAFKLVESGVFQEEGIIKLLKFPGSDELTYKIPGTRR 578
           IGGITPGSMPPFSKSIWEEGAAIKAFKLV+ G+FQEEGIIKLL+FP SDE  + IPGTRR
Sbjct: 583 IGGITPGSMPPFSKSIWEEGAAIKAFKLVDKGIFQEEGIIKLLQFPNSDESAHNIPGTRR 642

Query: 579 LQDNLSDLHAQVAA 592
           LQDNLSDL AQ  A
Sbjct: 643 LQDNLSDLQAQSVA 656



 Score =  265 bits (676), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 152/274 (55%), Positives = 162/274 (59%), Gaps = 106/274 (38%)

Query: 1   IAGAIIQAPQLDINTVAAGGGSKLKFQFGAFRVGPESVGAHPGPVCYRKGGQLAVTDANL 60
           IAGAIIQAPQLDINTVAAGG                               +LAVTDANL
Sbjct: 237 IAGAIIQAPQLDINTVAAGG-------------------------------ELAVTDANL 265

Query: 61  ILGFVIPDYFPSIFGPHEDQPLDIEATREEFKKLAKQINSYRKSQDASAKDMTVEEIALG 120
           ILGF                             LAKQINSYRKSQD SAKDM VEEIALG
Sbjct: 266 ILGF-----------------------------LAKQINSYRKSQDPSAKDMMVEEIALG 296

Query: 121 FVNVANETMCRPIRQLTEMKGHETRSHALACFGGAGPQHACAIARSLGMKEVLIHKFCGI 180
           FVNVANETMCRPIRQLTEMKGHETR+HALACFGGAGPQHACAIARSLGMKEVLIH+FCGI
Sbjct: 297 FVNVANETMCRPIRQLTEMKGHETRNHALACFGGAGPQHACAIARSLGMKEVLIHRFCGI 356

Query: 181 LSAYGMGLADVVEEAQEPYSAVYGPESVLEASCREDMXXXXXXXXXXAQGFRGENITTET 240
           LSAYGMGLADV+EEAQEPYSAVY                                     
Sbjct: 357 LSAYGMGLADVIEEAQEPYSAVY------------------------------------- 379

Query: 241 YLNLRYEGTDTSIMVRRHVNEDGSAGDYAVEFVK 274
                    DT+IMV+R +NEDG   DYA+EF++
Sbjct: 380 ---------DTAIMVKRQLNEDGVGCDYAIEFLE 404