Jatropha Genome Database

JcCB0231621.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0231621.20 - phase: 0 /partial
         (145 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009290001 assembled CDS                                       244   9e-66
GSVIVT01032523001 assembled CDS                                       230   2e-61
GSVIVT01033168001 assembled CDS                                       229   3e-61
GSVIVT01016135001 assembled CDS                                       229   3e-61
GSVIVT01002010001 assembled CDS                                       218   6e-58
GSVIVT01025737001 assembled CDS                                       159   5e-40
GSVIVT01033767001 assembled CDS                                       157   1e-39
GSVIVT01034719001 assembled CDS                                       156   4e-39
GSVIVT01031405001 assembled CDS                                       155   8e-39

>GSVIVT01009290001 assembled CDS
          Length = 647

 Score =  244 bits (624), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 115/140 (82%), Positives = 122/140 (87%)

Query: 6   VVKLQDDEELGLVQARWSFVNKDENLLTRLQNINLAFHFEVEQQXXXXXXXXXXXXXTAG 65
           V   +D+EELGLVQARWSFVNKDENLLTRLQNINL+FHFEVEQQ             TAG
Sbjct: 301 VPHFKDNEELGLVQARWSFVNKDENLLTRLQNINLSFHFEVEQQVNGVFINFFGFNGTAG 360

Query: 66  IWRIKALDDAGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHR 125
           +WRIKAL+D+GGWLERTTVEDMDIAVRAHL GWKFIFLNDVECQCELPESYEAYRKQQHR
Sbjct: 361 VWRIKALEDSGGWLERTTVEDMDIAVRAHLQGWKFIFLNDVECQCELPESYEAYRKQQHR 420

Query: 126 WHSGPMQLFRLCLPAIIRSK 145
           WHSGPMQLFRLCLP +IRSK
Sbjct: 421 WHSGPMQLFRLCLPDVIRSK 440


>GSVIVT01032523001 assembled CDS
          Length = 662

 Score =  230 bits (586), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 106/137 (77%), Positives = 117/137 (85%)

Query: 9   LQDDEELGLVQARWSFVNKDENLLTRLQNINLAFHFEVEQQXXXXXXXXXXXXXTAGIWR 68
            + + E+GLVQARWSFVNKDENLLTRLQNINL FHFEVEQQ             TAG+WR
Sbjct: 315 FKGNPEVGLVQARWSFVNKDENLLTRLQNINLCFHFEVEQQVNGLFLEFFGFNGTAGVWR 374

Query: 69  IKALDDAGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHRWHS 128
           IKAL+++GGWLERTTVEDMDIAVRAHLHGWKFIFLNDV+  CELPESY+AY+KQQHRWHS
Sbjct: 375 IKALEESGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVKVPCELPESYQAYKKQQHRWHS 434

Query: 129 GPMQLFRLCLPAIIRSK 145
           GPMQLFRLCLPAI+ SK
Sbjct: 435 GPMQLFRLCLPAIVTSK 451


>GSVIVT01033168001 assembled CDS
          Length = 403

 Score =  229 bits (585), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 108/140 (77%), Positives = 118/140 (84%)

Query: 6   VVKLQDDEELGLVQARWSFVNKDENLLTRLQNINLAFHFEVEQQXXXXXXXXXXXXXTAG 65
           V   Q + +LGLVQARW+FVNKDENLLTRLQNINL FHFEVEQQ             TAG
Sbjct: 112 VPHFQGNPDLGLVQARWAFVNKDENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAG 171

Query: 66  IWRIKALDDAGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHR 125
           +WRIKAL+D+GGWLERTTVEDMDIAVRAHL+GWKFIFLNDV+  CE+PESYEAYRKQQHR
Sbjct: 172 VWRIKALEDSGGWLERTTVEDMDIAVRAHLNGWKFIFLNDVKVLCEVPESYEAYRKQQHR 231

Query: 126 WHSGPMQLFRLCLPAIIRSK 145
           WHSGPMQLFRLCLPA+I SK
Sbjct: 232 WHSGPMQLFRLCLPAVITSK 251


>GSVIVT01016135001 assembled CDS
          Length = 436

 Score =  229 bits (585), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 108/140 (77%), Positives = 117/140 (83%)

Query: 6   VVKLQDDEELGLVQARWSFVNKDENLLTRLQNINLAFHFEVEQQXXXXXXXXXXXXXTAG 65
           V   +D+ ELGLVQARW+FVNKDENLLTRLQNINL FHFEVEQQ             TAG
Sbjct: 112 VPHFKDNPELGLVQARWAFVNKDENLLTRLQNINLCFHFEVEQQVNGVFINFFGFNGTAG 171

Query: 66  IWRIKALDDAGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHR 125
           +WRIK L+D+GGWLERTTVEDMDIAVRAHL+GWKFIFLNDV+  CE+PESYEAYRKQQHR
Sbjct: 172 VWRIKTLEDSGGWLERTTVEDMDIAVRAHLNGWKFIFLNDVKVLCEVPESYEAYRKQQHR 231

Query: 126 WHSGPMQLFRLCLPAIIRSK 145
           WHSGPM LFRLCLPAII SK
Sbjct: 232 WHSGPMHLFRLCLPAIITSK 251


>GSVIVT01002010001 assembled CDS
          Length = 630

 Score =  218 bits (556), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 101/137 (73%), Positives = 114/137 (83%)

Query: 9   LQDDEELGLVQARWSFVNKDENLLTRLQNINLAFHFEVEQQXXXXXXXXXXXXXTAGIWR 68
            + +++L LVQ RW+FVNKDENLLTRLQNINL+FHFEVEQQ             TAG+WR
Sbjct: 340 FKGNDDLALVQTRWAFVNKDENLLTRLQNINLSFHFEVEQQVNGVFINFFGFNGTAGVWR 399

Query: 69  IKALDDAGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHRWHS 128
           IKAL+D GGWLERTTVEDMD+AVRAHL GWKFI+LNDV+C CELPESYEAY+KQQHRWHS
Sbjct: 400 IKALEDCGGWLERTTVEDMDVAVRAHLCGWKFIYLNDVKCLCELPESYEAYKKQQHRWHS 459

Query: 129 GPMQLFRLCLPAIIRSK 145
           GPMQLFRLC   I+RSK
Sbjct: 460 GPMQLFRLCFFDILRSK 476


>GSVIVT01025737001 assembled CDS
          Length = 443

 Score =  159 bits (402), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 74/134 (55%), Positives = 94/134 (70%)

Query: 9   LQDDEELGLVQARWSFVNKDENLLTRLQNINLAFHFEVEQQXXXXXXXXXXXXXTAGIWR 68
           L ++  LGLVQARW FVN DE L+TRLQ ++L +HF VEQ+             TAG+WR
Sbjct: 161 LLENPGLGLVQARWKFVNADECLMTRLQEMSLDYHFSVEQEVGSSTCSFFGFNGTAGVWR 220

Query: 69  IKALDDAGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHRWHS 128
           I+A++DAGGW +RTTVEDMD+AVRA L GWKF+F+ D+  + ELP +++AYR QQHRW  
Sbjct: 221 IQAINDAGGWKDRTTVEDMDLAVRASLKGWKFLFVGDLSVKNELPSTFKAYRYQQHRWSC 280

Query: 129 GPMQLFRLCLPAII 142
           GP  LFR     II
Sbjct: 281 GPANLFRKMTKEII 294


>GSVIVT01033767001 assembled CDS
          Length = 540

 Score =  157 bits (398), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 72/137 (52%), Positives = 96/137 (70%)

Query: 9   LQDDEELGLVQARWSFVNKDENLLTRLQNINLAFHFEVEQQXXXXXXXXXXXXXTAGIWR 68
           L  + E+ LVQARW FVN DE L+TR+Q ++L +HF VEQ+             TAG+WR
Sbjct: 212 LVHNPEIALVQARWKFVNSDECLMTRMQEMSLDYHFTVEQEVGSSTYAFFGFNGTAGVWR 271

Query: 69  IKALDDAGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHRWHS 128
           I AL++AGGW +RTTVEDMD+AVRA L GWKF++L  ++ + ELP +++AYR QQHRW  
Sbjct: 272 IAALNEAGGWKDRTTVEDMDLAVRASLKGWKFVYLGTLKVKNELPSTFKAYRYQQHRWSC 331

Query: 129 GPMQLFRLCLPAIIRSK 145
           GP  LFR  +  I+R+K
Sbjct: 332 GPANLFRKMVMEIVRNK 348


>GSVIVT01034719001 assembled CDS
          Length = 449

 Score =  156 bits (394), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 71/137 (51%), Positives = 95/137 (69%)

Query: 9   LQDDEELGLVQARWSFVNKDENLLTRLQNINLAFHFEVEQQXXXXXXXXXXXXXTAGIWR 68
           L  + E+GLVQARW FVN DE L+TR+Q ++L +HF VEQ+             TAG+WR
Sbjct: 128 LVHNPEIGLVQARWKFVNSDECLMTRMQEMSLDYHFTVEQEVGSSSHAFFGFNGTAGVWR 187

Query: 69  IKALDDAGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHRWHS 128
           I AL++AGGW +RTTVEDMD+AVRA L GWKF+++  ++ + ELP +++AYR QQHRW  
Sbjct: 188 ISALNEAGGWKDRTTVEDMDLAVRASLKGWKFVYVGALKVKNELPSTFKAYRYQQHRWSC 247

Query: 129 GPMQLFRLCLPAIIRSK 145
           GP  LF+     I R+K
Sbjct: 248 GPANLFKKMAIEIARNK 264


>GSVIVT01031405001 assembled CDS
          Length = 429

 Score =  155 bits (391), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 68/134 (50%), Positives = 95/134 (70%)

Query: 12  DEELGLVQARWSFVNKDENLLTRLQNINLAFHFEVEQQXXXXXXXXXXXXXTAGIWRIKA 71
           + ++ LVQ RW FVN DE L+TR+Q ++L +HF VEQ+             TAG+WRI A
Sbjct: 111 NSDIALVQGRWRFVNADECLMTRMQEMSLDYHFTVEQEVGSATHAFFGFNGTAGVWRIAA 170

Query: 72  LDDAGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPM 131
           +++AGGW +RTTVEDMD+AVRA L GWKF++L D++ + ELP +++A+R QQHRW  GP 
Sbjct: 171 INEAGGWKDRTTVEDMDLAVRASLKGWKFVYLGDLQVKSELPSTFKAFRFQQHRWSCGPA 230

Query: 132 QLFRLCLPAIIRSK 145
            LFR  +  I+R+K
Sbjct: 231 NLFRKMVMEIVRNK 244