Jatropha Genome Database

JcCB0231591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0231591.10 + phase: 1 /pseudo/partial
         (158 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035963001 assembled CDS                                       155   8e-39

>GSVIVT01035963001 assembled CDS
          Length = 1220

 Score =  155 bits (392), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 89/166 (53%), Positives = 107/166 (64%), Gaps = 16/166 (9%)

Query: 1    EKVCNDRTGEMVHSLIFMGPTFYQQLVHMA*DKVKFTQHGAC-PSTYQAVCCRPEAFWWY 59
            E+V N RTGEM+ SLIFMGPTFYQ+L+HMA DKVKF   G   P T Q V  R       
Sbjct: 1063 ERVYNGRTGEMLRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRF---- 1118

Query: 60   QVW*DGA*LPHSSR-CICKPA*ATFYSQRL--LAD-AYL---PDCKNFTNVIERTVPQSR 112
                 G       R C+     A    +RL  L+D AY+     CKN +NVI+R+V   R
Sbjct: 1119 ----GGIKFGEMERDCLIAHGAAANLHERLFTLSDSAYMHICRRCKNISNVIQRSVAGGR 1174

Query: 113  KIKAPYCRICESADDTVKVNLPYGAKVLCQELFSMGISLKFETQLC 158
            K++ PYCR CES+++ VKVN+PYGAK+LCQELFSMGISLKFETQLC
Sbjct: 1175 KVRGPYCRYCESSEEIVKVNVPYGAKLLCQELFSMGISLKFETQLC 1220