Jatropha Genome Database

JcCB0231181.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0231181.20 - phase: 1 /partial
         (133 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018802001 assembled CDS                                        97   3e-21

>GSVIVT01018802001 assembled CDS
          Length = 449

 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/104 (50%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 32  VKDVNYYKNLIQQHGGERQETPHQYSSRYSHQIG--SNPELV-NPKSRDAKPKIMKPCIY 88
           VKDVNYYK+L++QHGGE+Q T  Q   +Y++        EL+ N K  + KPK  K CI+
Sbjct: 343 VKDVNYYKSLVKQHGGEKQGTQDQIIPQYANHENYLQGMELIQNFKPTELKPKSQKSCIF 402

Query: 89  FNSSRGCRHGANCAYQHDTSSPQRSSSIPEVQNAKRMKMDREIS 132
           +NS  GCR+G NC YQHDT S  R  S+ E + AKRMK+D +I+
Sbjct: 403 YNSPTGCRNGTNCPYQHDTFSQLRCGSMLEDKRAKRMKLDGKIT 446