Jatropha Genome Database

JcCB0231181.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0231181.10 - phase: 0 
         (236 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009861001 assembled CDS                                       226   8e-60

>GSVIVT01009861001 assembled CDS
          Length = 128

 Score =  226 bits (575), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 108/121 (89%), Positives = 110/121 (90%)

Query: 1   MLKFLSKVRIEFNALDPRIASCMEFLAQCNARKAKESNPACQVLVKRRTDDHPPQITVTF 60
           MLKFLSKVRIEFNALDPR ASC+EFLAQCNARKAKESNPACQ+LVKRRTDDHPPQITVTF
Sbjct: 1   MLKFLSKVRIEFNALDPRTASCLEFLAQCNARKAKESNPACQLLVKRRTDDHPPQITVTF 60

Query: 61  VNGVEEVFDGTKIPAQTIRTMILEKGQLLETEQMFREAGEKWPVIIPEEELHMPAPGTKV 120
           VNGVEEVFD T  PAQ IR MILEKGQ LETEQMFREAGE WPVIIPEEELH  APGTK 
Sbjct: 61  VNGVEEVFDATTTPAQAIRNMILEKGQHLETEQMFREAGEAWPVIIPEEELHQFAPGTKP 120

Query: 121 R 121
           R
Sbjct: 121 R 121