Jatropha Genome Database

JcCB0231041.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0231041.10 - phase: 0 /partial
         (202 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024690001 assembled CDS                                       315   1e-86
GSVIVT01024688001 assembled CDS                                       314   2e-86
GSVIVT01034666001 assembled CDS                                       184   2e-47

>GSVIVT01024690001 assembled CDS
          Length = 259

 Score =  315 bits (806), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 147/186 (79%), Positives = 166/186 (89%)

Query: 2   LNRKLVHISIGLVFMLCWPLFSSGHRGAILAALTPGINIFRMLILGLGIWKDEATVKSMS 61
           + RKLVHIS+GLVFML WPLFSSG +GA+LAAL PG+NI RML+LGLGIWKDEA VKSMS
Sbjct: 41  VGRKLVHISVGLVFMLFWPLFSSGRQGAVLAALIPGVNIIRMLLLGLGIWKDEAIVKSMS 100

Query: 62  RFGDHRELLKGPLYYALTITLTCAIYWRTSPITIAAICNLCAGDGMADIVGRRFGNHKLP 121
           R GDHRELLKGPLYYA  ITL CAIYWRTSPI IAAICNLCAGDG+AD+VGRRFG  K+P
Sbjct: 101 RHGDHRELLKGPLYYASAITLACAIYWRTSPIAIAAICNLCAGDGLADLVGRRFGIQKIP 160

Query: 122 YNTNKSIAGSVAMALAGFLASITYMHYFASFGYVRESWEMTMGFLVVSIASAIVESLPIS 181
           YN NKS +GS+AMA+AGFLASI YMHYFASFG+++ESWEM  GFLVVS+ S +VESLPIS
Sbjct: 161 YNRNKSFSGSLAMAVAGFLASIGYMHYFASFGFIQESWEMVFGFLVVSLGSTLVESLPIS 220

Query: 182 TQLDDN 187
           ++LDDN
Sbjct: 221 SELDDN 226


>GSVIVT01024688001 assembled CDS
          Length = 328

 Score =  314 bits (804), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 146/186 (78%), Positives = 166/186 (89%)

Query: 2   LNRKLVHISIGLVFMLCWPLFSSGHRGAILAALTPGINIFRMLILGLGIWKDEATVKSMS 61
           ++RK VHIS+GLVFML WPLFSSG RGA+LAAL PG+NI RML+LGLGIWKDEA VKSMS
Sbjct: 93  VSRKFVHISVGLVFMLFWPLFSSGCRGALLAALIPGVNIIRMLLLGLGIWKDEAVVKSMS 152

Query: 62  RFGDHRELLKGPLYYALTITLTCAIYWRTSPITIAAICNLCAGDGMADIVGRRFGNHKLP 121
           R+GDHRELLKGPL YAL ITL CAIYWRTSPI IAAICNLCAGDG+AD+VGRRFG  K+P
Sbjct: 153 RYGDHRELLKGPLCYALAITLACAIYWRTSPIAIAAICNLCAGDGLADLVGRRFGIQKIP 212

Query: 122 YNTNKSIAGSVAMALAGFLASITYMHYFASFGYVRESWEMTMGFLVVSIASAIVESLPIS 181
           YN NKS +GS+AMA+AGFLASI YMHYFASFG+++ESWEM  GFLVVS+ S +VESLPIS
Sbjct: 213 YNRNKSFSGSLAMAVAGFLASIGYMHYFASFGFIQESWEMVFGFLVVSLGSTLVESLPIS 272

Query: 182 TQLDDN 187
            ++DDN
Sbjct: 273 NEIDDN 278


>GSVIVT01034666001 assembled CDS
          Length = 294

 Score =  184 bits (467), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 87/188 (46%), Positives = 127/188 (67%), Gaps = 1/188 (0%)

Query: 1   KLNRKLVHISIGLVFMLCWPLFSSGHRGAILAALTPGINIFRMLILGLGIWKDEATVKSM 60
            L+RKLVHI  GL+FM+ W +FS+       A+L P +N  R++I GL +  DE  +KS+
Sbjct: 90  SLSRKLVHILSGLLFMVSWSIFSTSTEARYFASLVPVVNCLRLVIYGLSLATDEGLIKSV 149

Query: 61  SRFGDHRELLKGPLYYALTITLTCAIYWRTSPITIAAICNLCAGDGMADIVGRRFGNHKL 120
           +R G   ELL+GPLYY L + +   ++WR SPI + ++  +C GDG+ADI+GRRFG+ KL
Sbjct: 150 TREGKPEELLRGPLYYVLILLVCTMVFWRESPIGVISLSMMCGGDGIADIMGRRFGSLKL 209

Query: 121 PYNTNKSIAGSVAMALAGFLASITYMHYFASFGYVRESWEMTMGFL-VVSIASAIVESLP 179
           PYN  KS AGS++M + GFL SI  +HYF++ GY +  W  TM  + ++S+ + +VESLP
Sbjct: 210 PYNQQKSWAGSISMFVFGFLISIGMLHYFSALGYFQLDWFWTMEKVALISLVATVVESLP 269

Query: 180 ISTQLDDN 187
            +  +DDN
Sbjct: 270 TTKVVDDN 277