Jatropha Genome Database

JcCB0230941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0230941.10 - phase: 1 /pseudo/partial
         (149 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014186001 assembled CDS                                       221   1e-58
GSVIVT01035210001 assembled CDS                                        50   5e-07
GSVIVT01029388001 assembled CDS                                        49   1e-06

>GSVIVT01014186001 assembled CDS
          Length = 396

 Score =  221 bits (562), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 100/137 (72%), Positives = 120/137 (87%)

Query: 13  LKSLAEREGVSDRVSFITSCSTVERNELLSQCLSVIYTPKDEHFGIVPLEAMAAYKPVIA 72
           L++LA+REGVSD+V FITSCST ERNELLSQCL V+YTPKDEHFGIVPLEAMAA+KPVI 
Sbjct: 260 LENLADREGVSDQVKFITSCSTTERNELLSQCLCVLYTPKDEHFGIVPLEAMAAHKPVIG 319

Query: 73  CNSGGPTETVKDGVTGFLCESTPKAFSLAMAKLIQDPQMAKRMGEQARQHVTESFSTKIF 132
           CNSGGP ET+KDGVTGFLC+  P  FSLAMA+LI+DP+MA  MG +AR+HV+ESFST+IF
Sbjct: 320 CNSGGPVETIKDGVTGFLCKPIPLEFSLAMARLIRDPEMAVSMGGEARKHVSESFSTRIF 379

Query: 133 GQHLNQYLVDIASIKED 149
           GQ LN+Y++D+   K +
Sbjct: 380 GQRLNRYVIDVTEKKRE 396


>GSVIVT01035210001 assembled CDS
          Length = 842

 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 18/136 (13%)

Query: 13  LKSLAEREGVSDRVSFITSCSTVERNELLSQCLS---------VIYTPKDEHFGIVPLEA 63
           + +L E+  +  ++ +I + +   RN  L +C++          IY    E FG+  +EA
Sbjct: 639 MHTLIEKYQLKGQIRWIAAQNDRRRNGELYRCIADTKGAFVQPAIY----EAFGLTVIEA 694

Query: 64  MAAYKPVIACNSGGPTETVKDGVTGF-----LCESTPKAFSLAMAKLIQDPQMAKRMGEQ 118
           M    P  A N GGP E + DGV+GF     + + +    +    K   D     ++ + 
Sbjct: 695 MNCGLPTFATNQGGPAEIIVDGVSGFHIDPNIGDESSNKIADFFEKCRDDSDHWNKISKA 754

Query: 119 ARQHVTESFSTKIFGQ 134
             Q + E ++ KI+  
Sbjct: 755 GLQRINECYTWKIYAN 770


>GSVIVT01029388001 assembled CDS
          Length = 906

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 12/132 (9%)

Query: 13  LKSLAEREGVSDRVSFITSCSTVERNELLSQCLS-----VIYTPKDEHFGIVPLEAMAAY 67
           + SL E+  +  ++ +I + +   RN  L +C++      +     E FG+  +EAM   
Sbjct: 633 MHSLIEKYQLKGQLRWIAAQNDRNRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCG 692

Query: 68  KPVIACNSGGPTETVKDGVTGFLC------ESTPKAFSLAMAKLIQDPQMAKRMGEQARQ 121
            P  A N GGP E + DGV+GF        ES+ K       K   D +   ++     Q
Sbjct: 693 LPTFATNQGGPAEIIFDGVSGFHIDPSNGDESSDKIADF-FEKCKTDSEYWNKISTAGLQ 751

Query: 122 HVTESFSTKIFG 133
            + E ++ KI+ 
Sbjct: 752 RIYECYTWKIYA 763