Jatropha Genome Database

JcCB0229931.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0229931.10 + phase: 2 /partial
         (227 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000714001 assembled CDS                                       138   2e-33
GSVIVT01021790001 assembled CDS                                       108   2e-24
GSVIVT01035557001 assembled CDS                                        50   7e-07

>GSVIVT01000714001 assembled CDS
          Length = 420

 Score =  138 bits (347), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/197 (41%), Positives = 106/197 (53%), Gaps = 1/197 (0%)

Query: 28  GHGIPKAQVEADGGSLRLPALTSVQRKQEVPMRQXXXXXXXXXXXXXXXXXXXXXXXHLD 87
           GH  P  Q + +GGSL +PA  + Q K    +                         ++D
Sbjct: 148 GHVFPITQDKVEGGSLGIPASATSQNKSGAQVITTTSGSSRELSDDDELEGETDTTGNMD 207

Query: 88  PADEKRARRMQXXXXXXXXXXXXKQAQLNELEAQVGQXXXXXXXXXXXXXXINKKCDDAS 147
           PADEKRARRM             KQ  L+ELE QV Q              IN+K ++A+
Sbjct: 208 PADEKRARRMLSNRESARRSRRRKQEHLSELETQVSQLGVENSSLLKRLTDINQKYNEAA 267

Query: 148 VDNRILNANIETLRTKVKMAEDQVKRVTGLNPMLLARSNIPSLGMQFVAG-QTDTSTNVA 206
           VDNR+L A++ETLRTKV+MAED VKRVTGL  +L A  +IPS+GM FV    ++TS + A
Sbjct: 268 VDNRVLKADVETLRTKVRMAEDAVKRVTGLTSLLPAIPDIPSMGMPFVNNTSSNTSADAA 327

Query: 207 GPMQTNNNHFFHHSVPN 223
            P+Q ++NHF H  VPN
Sbjct: 328 VPVQRDSNHFIHPPVPN 344


>GSVIVT01021790001 assembled CDS
          Length = 383

 Score =  108 bits (270), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/178 (37%), Positives = 89/178 (50%), Gaps = 1/178 (0%)

Query: 26  GNGHGIPKAQVEADGGSLRLPALTSVQRKQEVPMRQXXXXXXXXXXXXXXXXXXXXXXXH 85
           G+G+ +  A  +  GG L +P+L ++Q+K    +R                        +
Sbjct: 155 GSGYDLSGAPDKEAGGPLGIPSLPAMQKKAGAQLRPTTSESSREHSDDDEVEGETETIEN 214

Query: 86  LDPADEKRARRMQXXXXXXXXXXXXKQAQLNELEAQVGQXXXXXXXXXXXXXXINKKCDD 145
           +DPAD KR RRM             KQA L ELE QV Q              I++K ++
Sbjct: 215 MDPADAKRVRRMLSNRESARRSRRRKQAHLTELETQVAQLRLENSSLLKRLTDISQKYNE 274

Query: 146 ASVDNRILNANIETLRTKVKMAEDQVKRVTGLNPMLLARSNIPSLGMQ-FVAGQTDTS 202
           A+VDNR+L A++ETLR KVKMAE+ VKRVTGLNP+    S I   GM  F    +DTS
Sbjct: 275 AAVDNRVLKADVETLRAKVKMAEETVKRVTGLNPLFQTMSEISMAGMHSFDGSPSDTS 332


>GSVIVT01035557001 assembled CDS
          Length = 419

 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 3/107 (2%)

Query: 87  DPADEKRARRMQXXXXXXXXXXXXKQAQLNELEAQVGQXXXXXXXXXXXXXXINKKCDDA 146
           DP + KR RRM             KQA L +LE QV Q               +++  DA
Sbjct: 246 DPNNLKRMRRMVSNRESARRSRKRKQAHLADLELQVEQLRGENASLYKQLTDASQQFGDA 305

Query: 147 SVDNRILNANIETLRTKVKMAEDQVKR---VTGLNPMLLARSNIPSL 190
           + +NR+L +++E LR KV++ E  V R    + LN +L    + P L
Sbjct: 306 NTNNRVLKSDVEALRAKVELVEGMVARGSVTSSLNHILQTHLSSPQL 352