Jatropha Genome Database

JcCB0229861.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0229861.10 + phase: 0 /pseudo/partial
         (429 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036258001 assembled CDS                                       602   e-172

>GSVIVT01036258001 assembled CDS
          Length = 591

 Score =  602 bits (1551), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 283/324 (87%), Positives = 304/324 (93%)

Query: 106 RCGVLTVEIEHVDVATLEKLEQQGIDCQPKASTIKIIQDKYLQKVHFSRHGIPLPEFMQI 165
           RCG+LTVEIEHVDVATLEKLEQQG+DCQPKASTI+IIQDKYLQKVHFSRH IPLPEFMQI
Sbjct: 98  RCGILTVEIEHVDVATLEKLEQQGVDCQPKASTIRIIQDKYLQKVHFSRHAIPLPEFMQI 157

Query: 166 NNLEGAKKAGDLFGYPLMIKSKRLAYDGRGNAVAKSEEELSFAVAALGGFDRGLYVEKWA 225
           ++LE AK+AGDLFGYPLMIKSKRLAYDGRGNAVAKSE ELS AV ALGG++ GLY+EKWA
Sbjct: 158 DDLESAKRAGDLFGYPLMIKSKRLAYDGRGNAVAKSEVELSSAVTALGGYEHGLYIEKWA 217

Query: 226 PFVKELAVIVARGRDNSIFCYPVVETIHKENICHIVKAPADVPWKIRKLATDVAHEAVSS 285
           PFVKELAVIVARGRDNSI CYPVVETIHKENICHIVKAPADVPWKIR+LATDVA++AVSS
Sbjct: 218 PFVKELAVIVARGRDNSILCYPVVETIHKENICHIVKAPADVPWKIRRLATDVAYKAVSS 277

Query: 286 LEGAGVFAVELFLTSEGQILLNEVAPRPHNSGHHTIESCYTSQFEQHLRAVVGLPLGDPS 345
           LEGAGVFAVE+FLT +GQILLNEVAPRPHNSGHHTIESCYTSQFEQHLRAVVGLPLGDPS
Sbjct: 278 LEGAGVFAVEMFLTIDGQILLNEVAPRPHNSGHHTIESCYTSQFEQHLRAVVGLPLGDPS 337

Query: 346 MKTPAAIMYNLLGEDEGEPGFLLAQQLIGRALNVQGATVHWYDKPEMRKQRKMGHITITG 405
           MKTPAAIMYNLLGEDEGE GF  A +LIG+AL + GA+VHWYDKPEMRKQRKMGHITI G
Sbjct: 338 MKTPAAIMYNLLGEDEGEAGFSFANKLIGKALRIPGASVHWYDKPEMRKQRKMGHITIVG 397

Query: 406 PSMGIVEARLNSMLKEQGPDGHSA 429
           PSMGIVEARL+SML E+  D  S+
Sbjct: 398 PSMGIVEARLHSMLGEESVDDQSS 421