Jatropha Genome Database

JcCB0229681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0229681.10 + phase: 0 
         (90 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01001692001 assembled CDS                                       172   3e-44

>GSVIVT01001692001 assembled CDS
          Length = 546

 Score =  172 bits (436), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 80/90 (88%), Positives = 85/90 (94%)

Query: 1   MGQWTPESVGDYASGTNHVLPTYGYARMYGGVSLDSFLKYMTVQSLTEEGLKNLGPYVAT 60
           +GQWTPESVGDYASGTNHVLPTYGYARMYGG+SLDSFLKYMTVQSLTEEGL+ LGPYV  
Sbjct: 457 LGQWTPESVGDYASGTNHVLPTYGYARMYGGLSLDSFLKYMTVQSLTEEGLRKLGPYVEA 516

Query: 61  MAEVEGLEAHKRAVTLRLADIEARKVQNVR 90
           MAEVEGLEAHKRAVTLRL DIEAR+V N+R
Sbjct: 517 MAEVEGLEAHKRAVTLRLQDIEARQVPNMR 546