Jatropha Genome Database

JcCB0229331.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0229331.10 - phase: 0 
         (134 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018124001 assembled CDS                                       204   9e-54
GSVIVT01012140001 assembled CDS                                        52   9e-08

>GSVIVT01018124001 assembled CDS
          Length = 441

 Score =  204 bits (519), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 100/133 (75%), Positives = 109/133 (81%), Gaps = 1/133 (0%)

Query: 1   MEDFSGYPIHEPFHXXXXXXXXXXX-XVDDHGLQKQIDELSSFSDTPAPSVTRVLYTEKD 59
           ME FSGYP  EP               VD  GLQKQIDELS+FSDTP+PSVTR+LY++ D
Sbjct: 1   MEQFSGYPTQEPDSVSSFSVDAVSSFSVDAQGLQKQIDELSNFSDTPSPSVTRILYSKMD 60

Query: 60  VLARRYIKNLMGLSGLSVREDAVGNIFGRWDGSEPELAAVATGSHIDAIPFSGKYDGVVG 119
           V ARRYIKNLMGLSGLS+REDAVGNIFGRW+G EPEL AVATGSHIDAIP+SGKYDGVVG
Sbjct: 61  VFARRYIKNLMGLSGLSIREDAVGNIFGRWEGYEPELTAVATGSHIDAIPYSGKYDGVVG 120

Query: 120 VLGAIEAINVLKR 132
           VLGAIEAINVL+R
Sbjct: 121 VLGAIEAINVLRR 133


>GSVIVT01012140001 assembled CDS
          Length = 478

 Score = 51.6 bits (122), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 1/94 (1%)

Query: 38  ELSSFSDTPAPSVTRVLYTEKDVLARRYIKNLMGLSGLSVREDAVGNIFGRWDGSEPELA 97
           EL   SD     + R   +   + A   I+  M  +GL    D +GN+ GR +G  P   
Sbjct: 55  ELGKVSDAEG-YLERTFLSPASIRAGNLIREWMEDAGLRTWMDQMGNVHGRVEGMNPSAD 113

Query: 98  AVATGSHIDAIPFSGKYDGVVGVLGAIEAINVLK 131
           A+  GSH+D +  +G +DG +G++ AI  + VL 
Sbjct: 114 ALLIGSHLDTVVDAGIFDGSLGIISAISVLKVLN 147