Jatropha Genome Database

JcCB0229021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0229021.10 + phase: 0 /pseudo/partial
         (307 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011170001 assembled CDS                                       106   2e-23

>GSVIVT01011170001 assembled CDS
          Length = 408

 Score =  106 bits (264), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/237 (38%), Positives = 129/237 (54%), Gaps = 26/237 (10%)

Query: 44  RLMGLDSLPDTNRIPTNG--NTVTRSRSVNFMDYLFEFDLSQA-HHRRVKTSLSFRDVPT 100
           RLMGLDSLP+ N +P     N++TRS S+NFMDY  E D +Q   HRRV+TS+SFR+VPT
Sbjct: 67  RLMGLDSLPERNWVPRAAALNSITRSMSLNFMDYFPEVDPAQGGQHRRVRTSVSFREVPT 126

Query: 101 LQNQKNNDFFLLYLDNIEKTKKTRPNKFRKAEVGLEE-SNKKEEKG-AVDVRKE-----K 153
             +Q+N+D F+L+LDN+ +  +  P+  RK+E+   E   KKEE+  + D  KE     K
Sbjct: 127 SLHQQNHDCFVLFLDNVGEAGEMGPH-MRKSEMRFPELKQKKEERSKSKDNSKEKALVKK 185

Query: 154 KNQRNNNLKISKLKDEPRKQVMHDNKQFSRPGSCKGGQVSSGFVSPKKVKDRRVPK-GKS 212
           +    N+ +  K K+EP++      K  S+ G+C G +  SG V  +K KD  VP   K 
Sbjct: 186 RESGENSKRACKGKNEPKRV---SGKLSSKLGTCYGVE-DSGSVLLQKKKD--VPATSKV 239

Query: 213 KCAVKPINQKEVLVESKLM-KKIKKQRAMKDLQCYSECXXXXXXXXXXXXXXEFPIY 268
           K  V     +E  V SK   KK K QR +  ++   EC               FP++
Sbjct: 240 KSPV-----REASVGSKFTKKKDKGQRGVNKVE--PECDSENSSPVSVLDHYGFPVH 289