Jatropha Genome Database

JcCB0227741.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0227741.10 - phase: 2 /partial
         (58 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003975001 assembled CDS                                       103   2e-23
GSVIVT01005873001 assembled CDS                                        57   1e-09

>GSVIVT01003975001 assembled CDS
          Length = 328

 Score =  103 bits (256), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/58 (75%), Positives = 49/58 (84%)

Query: 1   WISDSRDEYTNERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIMNIKRLELVGGV 58
           WISDSRDEYT ERL+A+ DEFKLYRCHTILNCARACPKGLNPGKQI  IK+  +   +
Sbjct: 271 WISDSRDEYTKERLDAVCDEFKLYRCHTILNCARACPKGLNPGKQIATIKQRHIADAI 328


>GSVIVT01005873001 assembled CDS
          Length = 141

 Score = 57.4 bits (137), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 1   WISDSRDEYTNERLEAINDEFK-LYRCHTILNCARACPKGLNPGKQIMNIKRLELVG 56
           W+ DSRD++ +ER++A+ +  K LYRC TI NC   CPK L+P   I  +K   LV 
Sbjct: 76  WVCDSRDDFVDERVQALTEGLKSLYRCRTIKNCTVNCPKSLDPANAIHKMKTRHLVS 132