Jatropha Genome Database

JcCB0226591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0226591.10 + phase: 1 /partial
         (213 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008196001 assembled CDS                                       351   1e-97
GSVIVT01029951001 assembled CDS                                       201   3e-52
GSVIVT01008048001 assembled CDS                                       196   7e-51
GSVIVT01011353001 assembled CDS                                       183   5e-47
GSVIVT01020720001 assembled CDS                                       182   9e-47
GSVIVT01021226001 assembled CDS                                       180   4e-46
GSVIVT01009075001 assembled CDS                                       156   7e-39

>GSVIVT01008196001 assembled CDS
          Length = 251

 Score =  351 bits (901), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 165/212 (77%), Positives = 186/212 (87%), Gaps = 1/212 (0%)

Query: 1   TVRPADVGLKEENPDDDRGHGIFGLNRLSRAARWAQPITYIDIYECDSFTMCIFCFPTSS 60
           T+ PADVGL+E+NP+DDRGHGIFGLN  +R ARWAQPITY+DI+EC+SFTMCIFCFPTSS
Sbjct: 40  TIGPADVGLREDNPEDDRGHGIFGLNGFNRIARWAQPITYLDIFECNSFTMCIFCFPTSS 99

Query: 61  VIPLHDHPGMTVFSKILYGSLHVKAYDWVEPTCILEGKESGNPPVKLAKLAVDKVLTAPC 120
           VIPLHDHPGMTV SK+LYGSLHVKAYDWVEP  I +GK  G   V+LAKLAVDKVLTAP 
Sbjct: 100 VIPLHDHPGMTVLSKVLYGSLHVKAYDWVEPARIQKGKGPGYFTVRLAKLAVDKVLTAPV 159

Query: 121 GTSILYPKSGGNLHCFTAVTPCAVLDILTPSYREDVGRKCSYYHDYPYSPFSSGNGSELG 180
           GTSILYPKSGGNLH FTA+TPCAVLD+L P Y+E  GRKC+YYHDYPYS FS+GN +E+ 
Sbjct: 160 GTSILYPKSGGNLHYFTAITPCAVLDVLAPPYQEASGRKCTYYHDYPYSSFSTGNEAEI- 218

Query: 181 DGKEEDYAWLAEIETPDNLYMRPGIYTGPAVN 212
            GKEEDYAWLAEIETPD+LYMR G+Y GPA+ 
Sbjct: 219 SGKEEDYAWLAEIETPDDLYMRQGVYAGPAIQ 250


>GSVIVT01029951001 assembled CDS
          Length = 275

 Score =  201 bits (510), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 104/215 (48%), Positives = 139/215 (64%), Gaps = 19/215 (8%)

Query: 2   VRPADVGLKEENPDDDRGHGIFGLNRLSRAARWAQPITYIDIYECDSFTMCIFCFPTSSV 61
           +RP DVGL ++ P            +  RAA+    +T   +Y+C+ F++CIF  P  +V
Sbjct: 70  MRPEDVGLSKDIP----------FFKAKRAAQGIPKVTCATVYKCEEFSLCIFFLPPRAV 119

Query: 62  IPLHDHPGMTVFSKILYGSLHVKAYDWVEPTCILEGKESGNPP--VKLAKLAVDKVLTAP 119
           IPLH+HPGMTVFSK+L GS+H+K+YDWV+P     G +S +PP  ++LA+L  D V TAP
Sbjct: 120 IPLHNHPGMTVFSKLLLGSMHIKSYDWVDPV----GSDSSSPPSKLRLARLKADSVFTAP 175

Query: 120 CGTSILYPKSGGNLHCFTAVTPCAVLDILTPSYREDVGRKCSYYHDYPYSPFSSGNG--- 176
           C TS+LYP SGGN+H FTA+TPCAVLD+L P Y +  GR CSYY D PY+PFS+G     
Sbjct: 176 CNTSVLYPTSGGNIHAFTAITPCAVLDVLGPPYSKKDGRDCSYYKDSPYTPFSNGEARTR 235

Query: 177 SELGDGKEEDYAWLAEIETPDNLYMRPGIYTGPAV 211
            E    +EE Y WL E+E P++  M    Y GP +
Sbjct: 236 KEEDGEEEERYGWLEEVEMPEDSKMDWTEYLGPQI 270


>GSVIVT01008048001 assembled CDS
          Length = 364

 Score =  196 bits (498), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 97/216 (44%), Positives = 137/216 (63%), Gaps = 18/216 (8%)

Query: 1   TVRPADVGLKEENPDDDRGHGIFGLNRLSRAARWAQPITYIDIYECDSFTMCIFCFPTSS 60
            ++P +VGL  + P            R + +     P+TY+ IYECD F++ IFC P S 
Sbjct: 155 NLKPENVGLSADMP----------YFRATGSDEVPPPVTYLHIYECDKFSIGIFCLPPSG 204

Query: 61  VIPLHDHPGMTVFSKILYGSLHVKAYDWVEPTCILEGKESGNPPV-------KLAKLAVD 113
           VIPLH+HPGMTVFSK+L+GS+H+K+YDWV      + + + +  +       +LAK+  D
Sbjct: 205 VIPLHNHPGMTVFSKLLFGSMHIKSYDWVADVSYSKNQNTHHEDLAALQHEPRLAKVHAD 264

Query: 114 KVLTAPCGTSILYPKSGGNLHCFTAVTPCAVLDILTPSYREDVGRKCSYYHDYPYSPFSS 173
             LTAPC TS+LYP +GGN+HCFTA+TPCA+LD+L P Y +D GR C+YY+D+PY+ FS 
Sbjct: 265 SDLTAPCKTSVLYPNAGGNMHCFTALTPCAMLDVLGPPYSDDEGRHCTYYNDFPYATFSG 324

Query: 174 GNGSELGDGKEEDYAWLAEIETPDNLYMRPGIYTGP 209
             GS L   + E   WL E+E P++  +   +Y GP
Sbjct: 325 DTGS-LQAEEMEGCGWLKEMEKPESFVVVGAMYRGP 359


>GSVIVT01011353001 assembled CDS
          Length = 279

 Score =  183 bits (465), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 89/188 (47%), Positives = 124/188 (65%), Gaps = 6/188 (3%)

Query: 29  SRAARWAQPITYIDIYECDSFTMCIFCFPTSSVIPLHDHPGMTVFSKILYGSLHVKAYDW 88
           + A   A  ITY+ +YEC+ F++ IFC P S VIPLH+HPGMTVFSK+L+GS+H+K+YDW
Sbjct: 90  TEAPDEAPKITYLHLYECEKFSIGIFCLPPSGVIPLHNHPGMTVFSKLLFGSMHIKSYDW 149

Query: 89  V-----EPTCILEGKESGNPPVKLAKLAVDKVLTAPCGTSILYPKSGGNLHCFTAVTPCA 143
                  P+      +  +P V+LAK+ VD   TAPC +SILYP  GGN+H FTA+T CA
Sbjct: 150 AVGSPCNPSANANPSQIQHPGVQLAKVKVDADFTAPCNSSILYPADGGNMHRFTALTACA 209

Query: 144 VLDILTPSYREDVGRKCSYYHDYPYSPFSSGNGSELGDGKEEDYAWLAEIETPDNLYMRP 203
           VLD+L P Y +  GR C+YY D+P++ FS  +G  + + + E YAWL E E  ++  +  
Sbjct: 210 VLDVLGPPYSDPEGRDCTYYFDFPFTNFSV-DGVSVPEEEREGYAWLQEREKLEDFAVVG 268

Query: 204 GIYTGPAV 211
            +Y GP +
Sbjct: 269 AVYNGPMI 276


>GSVIVT01020720001 assembled CDS
          Length = 239

 Score =  182 bits (462), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 92/211 (43%), Positives = 132/211 (62%), Gaps = 9/211 (4%)

Query: 2   VRPADVGLKEENPDDDRGHGIFGLNRLSRAARWAQPITYIDIYECDSFTMCIFCFPTSSV 61
           +RP+DVGL++E        G   +++ + +     PI Y+ ++ECDSF++ +FC P SS+
Sbjct: 37  IRPSDVGLEQEAQCARVWSG--PMHQCNGSHPSLPPIKYLHLHECDSFSIGVFCMPPSSI 94

Query: 62  IPLHDHPGMTVFSKILYGSLHVKAYDWVEPTCILEGKESGNPPVKLAKLAVDKVLTAPCG 121
           IPLH+HPGMTV SK+LYGSL+VK+YDW++     +  ++     + A+L  D  +TAPCG
Sbjct: 95  IPLHNHPGMTVLSKLLYGSLYVKSYDWLDFPAAADPSQA-----RPAELVRDTEMTAPCG 149

Query: 122 TSILYPKSGGNLHCFTAVTPCAVLDILTPSYREDVGRKCSYYHDYPYSPFSSGNGSELGD 181
           T+ILYP SGGN+H F AVTPCA+LDIL+P Y  + GR C+Y+ + P          +L  
Sbjct: 150 TTILYPSSGGNIHTFEAVTPCAILDILSPPYSSENGRHCTYFRNSPRKDLP--GELQLNG 207

Query: 182 GKEEDYAWLAEIETPDNLYMRPGIYTGPAVN 212
               D  WL E + PDN  +R G Y GP + 
Sbjct: 208 MTVSDVTWLEEFQPPDNFVIRRGQYRGPVIR 238


>GSVIVT01021226001 assembled CDS
          Length = 244

 Score =  180 bits (457), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 91/216 (42%), Positives = 136/216 (62%), Gaps = 13/216 (6%)

Query: 2   VRPADVGLKEENPDDDRG-----HGIFGLNRLSRAARWAQPITYIDIYECDSFTMCIFCF 56
           ++P++VGL++E     RG     HG  G    + + ++  PI Y+ ++ECD F++ IFC 
Sbjct: 36  MKPSNVGLEQEA-QLARGWKGSMHGANGKKVRNGSHQYPPPIKYLHLHECDRFSIGIFCM 94

Query: 57  PTSSVIPLHDHPGMTVFSKILYGSLHVKAYDWVEPTCILEGKESGNPPVKLAKLAVDKVL 116
           P SS+IPLH+HPGMTV SK+LYG+LHVK+YDW++     +  ++     + AKL  D  +
Sbjct: 95  PPSSIIPLHNHPGMTVLSKLLYGTLHVKSYDWLDLPGTADLSQA-----RPAKLVRDCEM 149

Query: 117 TAPCGTSILYPKSGGNLHCFTAVTPCAVLDILTPSYREDVGRKCSYYHDYPYSPFSSGNG 176
           +APCGT+ILYP +GGN+HCF A+TPCA+ D+L+P Y  + GR CSY+   P       + 
Sbjct: 150 SAPCGTTILYPTNGGNIHCFKAITPCALFDVLSPPYSSEDGRHCSYFRKSPRKDLPGID- 208

Query: 177 SELGDGKEEDYAWLAEIETPDNLYMRPGIYTGPAVN 212
            +L   K  +  WL EI+ P+N+ +  G Y GP + 
Sbjct: 209 -QLCGIKPSEVVWLEEIQPPENVVVLRGQYEGPIIR 243


>GSVIVT01009075001 assembled CDS
          Length = 242

 Score =  156 bits (395), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 79/174 (45%), Positives = 104/174 (59%), Gaps = 19/174 (10%)

Query: 38  ITYIDIYECDSFTMCIFCFPTSSVIPLHDHPGMTVFSKILYGSLHVKAYDWVEPTCILEG 97
           ITYI I ECD+F+M +FCFP     PLHDHP MTV SK+LYGS+HVKAYDWV      + 
Sbjct: 77  ITYIHIRECDNFSMGVFCFPAGGTFPLHDHPNMTVLSKLLYGSVHVKAYDWV------KA 130

Query: 98  KESGNPPVKLAKLAVDKVLTAPCGTSILYPKSGGNLHCFTAVTPCAVLDILTPSYREDVG 157
           + S    + LA +  + +  AP   SIL+P+SGGN+H FTA+TPCA+LD+L P Y E+ G
Sbjct: 131 ENSSCRTIGLAGIVTNSIFNAPREPSILFPRSGGNIHSFTALTPCAILDVLAPPYSEEFG 190

Query: 158 RKCSYYHDYPYSPFSSGNGSELGDGKEEDYAWLAEIETPDNLYMRPGIYTGPAV 211
           R  +Y++D P                   Y  L E + PD+L +    Y GP+V
Sbjct: 191 RPSTYFNDMPIPTLPG-------------YVILEERDLPDDLVVTRAPYLGPSV 231