Jatropha Genome Database

JcCB0225841.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0225841.10 + phase: 0 /partial
         (165 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036111001 assembled CDS                                       312   4e-86
GSVIVT01015663001 assembled CDS                                        49   9e-07

>GSVIVT01036111001 assembled CDS
          Length = 297

 Score =  312 bits (800), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 151/165 (91%), Positives = 154/165 (93%), Gaps = 9/165 (5%)

Query: 1   ELFEGYYFCQAQREDFFQRAKPYKGHPTILRMQKLAKELGVVIPVSFFEEANNAHYNSIA 60
           ELFEGYYFCQAQREDFFQRAKPYKGHPTILRMQKLAKELGVVIPVSFFEEANNAHYNSIA
Sbjct: 46  ELFEGYYFCQAQREDFFQRAKPYKGHPTILRMQKLAKELGVVIPVSFFEEANNAHYNSIA 105

Query: 61  IIDADGTDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGV---------EAA 111
           I+DADGTDLG+YRKSHIPDGPGYQEKFYFNPGDTGFKVF+TKFAKIGV         EAA
Sbjct: 106 IVDADGTDLGIYRKSHIPDGPGYQEKFYFNPGDTGFKVFETKFAKIGVAICWDQWFPEAA 165

Query: 112 RAMVLQGAEILLYPTAIGSEPQDEGLDSRDHWKRVMQGHAGANLV 156
           RAMVLQGAEILLYPTAIGSEPQD GLDS DHWKRVMQGHAGANLV
Sbjct: 166 RAMVLQGAEILLYPTAIGSEPQDTGLDSCDHWKRVMQGHAGANLV 210


>GSVIVT01015663001 assembled CDS
          Length = 413

 Score = 49.3 bits (116), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 16/139 (11%)

Query: 6   YYFCQAQREDFFQRAKPYKGHPTILRMQKLAKELGVVIPVSFFEEANNAH----YNSIAI 61
           + FC  ++  + + A+P  G  T   +Q LA++  +VI VS   E +  H    +N+  I
Sbjct: 148 FAFCTREKR-WSEFAEPVDGESTQF-LQDLAQKYNMVI-VSPILERDVKHGETIWNTAVI 204

Query: 62  IDADGTDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVEAA---------R 112
           I  +G  +G +RK+HIP    + E  Y+  G+TG  VF+T F KI +             
Sbjct: 205 IGNNGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAINICYGRHHPLNWL 264

Query: 113 AMVLQGAEILLYPTAIGSE 131
           A  L GAEI+  P+A   E
Sbjct: 265 AFGLNGAEIVFNPSATVGE 283