Jatropha Genome Database

JcCB0224951.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0224951.10 - phase: 0 /partial
         (205 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025704001 assembled CDS                                       378   e-106
GSVIVT01003837001 assembled CDS                                       213   4e-56
GSVIVT01023949001 assembled CDS                                       204   3e-53

>GSVIVT01025704001 assembled CDS
          Length = 366

 Score =  378 bits (971), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 178/193 (92%), Positives = 187/193 (96%)

Query: 1   VFRAAEVPIVWEEHYVGTEIDPRTESFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNL 60
           VFRAA+VPI WEEHYVG +IDPRT+SFLTWESLESVR+N VGLKGPMATPIGKGHRSLNL
Sbjct: 57  VFRAADVPIEWEEHYVGDQIDPRTQSFLTWESLESVRQNGVGLKGPMATPIGKGHRSLNL 116

Query: 61  TLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIIT 120
           TLRKELNLYANVRPCYSLPGYKTRYDDV+LITIRENTEGEYSGLEHQVVRGVVESLKIIT
Sbjct: 117 TLRKELNLYANVRPCYSLPGYKTRYDDVDLITIRENTEGEYSGLEHQVVRGVVESLKIIT 176

Query: 121 RQASLRVAEYAFHYAKAHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIKYEEVVI 180
           RQASLRVAEYAFHYAK HGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIKYEEVVI
Sbjct: 177 RQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIKYEEVVI 236

Query: 181 DNCCMMVCESLSL 193
           DNCCMM+ ++ +L
Sbjct: 237 DNCCMMLVKNPAL 249


>GSVIVT01003837001 assembled CDS
          Length = 308

 Score =  213 bits (542), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 103/184 (55%), Positives = 139/184 (75%), Gaps = 5/184 (2%)

Query: 4   AAEVPIVWEEHYVGTEIDPRTESFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLR 63
           A   P+ +E + V  ++    E     E LES+R+NKV LKG +ATP+G G  SLN+ LR
Sbjct: 3   AMHAPVYFERYEVHGDMKKVPE-----EVLESIRKNKVCLKGGLATPMGGGVSSLNVQLR 57

Query: 64  KELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQA 123
           KEL+LYA++  C++LPG  TR+ +V+++ IRENTEGEYSGLEH+VV GVVESLK+IT+  
Sbjct: 58  KELDLYASLVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFC 117

Query: 124 SLRVAEYAFHYAKAHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIKYEEVVIDNC 183
           S R+A+YAF YA  + R++V+A+HKANIM+  DGLFL+ CREVA KYP IKY E+++DNC
Sbjct: 118 SERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATKYPGIKYSEIIVDNC 177

Query: 184 CMMV 187
           CM +
Sbjct: 178 CMQL 181


>GSVIVT01023949001 assembled CDS
          Length = 308

 Score =  204 bits (518), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 94/186 (50%), Positives = 138/186 (74%), Gaps = 5/186 (2%)

Query: 2   FRAAEVPIVWEEHYVGTEIDPRTESFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLT 61
             A   P+ +E++ +  ++       +  E +ES+ +NKV LKG ++TP+G G  SLN+ 
Sbjct: 1   MEAMHAPVYFEKYEIHGDM-----KTVPPEVMESIHKNKVCLKGGLSTPVGGGVNSLNVQ 55

Query: 62  LRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITR 121
           LRKEL+LYA++  C +LPG  TR++DV+++ +RENTEGEY+GLEH+VV GVVESLK+IT+
Sbjct: 56  LRKELDLYASLVNCCNLPGLPTRHNDVDIVVVRENTEGEYAGLEHEVVPGVVESLKVITK 115

Query: 122 QASLRVAEYAFHYAKAHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIKYEEVVID 181
             S R+A+YAF Y+  + R++V+A+HKANIM+  DGLFL+ CREVA+ YP I Y E+++D
Sbjct: 116 FCSERIAKYAFEYSYLNNRKKVTAVHKANIMKLADGLFLESCREVAKNYPSIAYSEIIVD 175

Query: 182 NCCMMV 187
           NCCM +
Sbjct: 176 NCCMQL 181