Jatropha Genome Database

JcCB0224701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0224701.10 + phase: 2 /partial
         (223 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019415001 assembled CDS                                       253   7e-68

>GSVIVT01019415001 assembled CDS
          Length = 183

 Score =  253 bits (645), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 119/132 (90%), Positives = 126/132 (95%)

Query: 92  ATSSKGPKSLPFRVGHGFDLHRLEPGYPLIIGGINVPHDRGCEAHSDGDVLLHCVVDAIL 151
           + S+   KSLPFRVGHGFDLHRLEPGYPLIIGGI++PHDRGCEAHSDGDVLLHCVVDAIL
Sbjct: 16  SNSTAPSKSLPFRVGHGFDLHRLEPGYPLIIGGIDIPHDRGCEAHSDGDVLLHCVVDAIL 75

Query: 152 GALGLPDIGQIFPDSDPKWKGAPSSVFIQEAVRLMHEAGYDIGNLDATLILQRPKLSPHK 211
           GALGLPDIGQIFPDSDPKWKGAPSSVFI+EAVRLMHEAGY+IGNLDATLILQRPKLSPHK
Sbjct: 76  GALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQRPKLSPHK 135

Query: 212 EAIRENLCKLLG 223
           EAIR NL +LLG
Sbjct: 136 EAIRSNLSQLLG 147