Jatropha Genome Database

JcCB0224691.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0224691.10 + phase: 0 /partial
         (262 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01001461001 assembled CDS                                       426   e-120
GSVIVT01005041001 assembled CDS                                       398   e-111
GSVIVT01009786001 assembled CDS                                       263   4e-71
GSVIVT01015194001 assembled CDS                                       221   3e-58
GSVIVT01028599001 assembled CDS                                       218   2e-57
GSVIVT01028610001 assembled CDS                                       210   6e-55
GSVIVT01006150001 assembled CDS                                       188   2e-48
GSVIVT01028586001 assembled CDS                                       176   8e-45
GSVIVT01006081001 assembled CDS                                       176   9e-45
GSVIVT01035468001 assembled CDS                                       145   1e-35
GSVIVT01028598001 assembled CDS                                        89   2e-18
GSVIVT01022507001 assembled CDS                                        48   5e-06

>GSVIVT01001461001 assembled CDS
          Length = 607

 Score =  426 bits (1096), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 202/262 (77%), Positives = 233/262 (88%), Gaps = 1/262 (0%)

Query: 1   MRYCRPISFHKENNMLFIKSFMVLFLSCMTIRLNLCFSSYHSSLKTLSVDGHFTFDDLHH 60
           MRY   ISF + +++ FI SF++LFL C+T  ++LC     SSL+TLSVDGHF+F  + H
Sbjct: 31  MRYP-AISFLRPSSIRFIASFVILFLGCLTANISLCLPIIPSSLETLSVDGHFSFHGIEH 89

Query: 61  AAKDFGNRFQLLPLAVLHPRSVSDIANTIKHIWQLGPHSQLTVAARGHGHSLQGQAQAHQ 120
           AA+DFGNR+Q LP AVLHP+SVSDIA TIKH+WQ+GP S+LTVAARGHGHSLQGQAQAHQ
Sbjct: 90  AARDFGNRYQFLPQAVLHPKSVSDIAMTIKHVWQMGPGSELTVAARGHGHSLQGQAQAHQ 149

Query: 121 GVVINMESLQGPKMQIHAGKYPYIDVSGGELWINILHESVKYGLAPKSWTDYLHLTVGGT 180
           G+VINMESLQG +MQ++ G +PY+DVSGGELWINILHES+KYGLAPKSWTDYLHLTVGGT
Sbjct: 150 GIVINMESLQGTEMQVYTGNFPYVDVSGGELWINILHESLKYGLAPKSWTDYLHLTVGGT 209

Query: 181 LSNAGISGQAFRHGPQISNVYQLEVVTGKGEVVNCSEKQNGDLFHGVLGGLGQFGIITRA 240
           LSNAGISGQAFRHGPQISNV+ LEVVTGKGEV+NCS+ QNGDLFH VLGGLGQFGIITRA
Sbjct: 210 LSNAGISGQAFRHGPQISNVHWLEVVTGKGEVINCSKNQNGDLFHSVLGGLGQFGIITRA 269

Query: 241 QISLEPAPEQVKWIRVLYSDFA 262
           +ISLEPAP+ VKWIRVLYSDF+
Sbjct: 270 RISLEPAPKMVKWIRVLYSDFS 291


>GSVIVT01005041001 assembled CDS
          Length = 550

 Score =  398 bits (1023), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 191/269 (71%), Positives = 227/269 (84%), Gaps = 14/269 (5%)

Query: 8   SFHKENNMLFIKSFMVLFLSCMTIRLNLCF-------------SSY-HSSLKTLSVDGHF 53
           SF +  N +F + FM+LFLS +T R+NLC              SSY  SSLKT+ +DGHF
Sbjct: 7   SFFRLKNTIFFRIFMILFLSSITHRMNLCSNLPLADPSLPNLGSSYVLSSLKTIHLDGHF 66

Query: 54  TFDDLHHAAKDFGNRFQLLPLAVLHPRSVSDIANTIKHIWQLGPHSQLTVAARGHGHSLQ 113
            FD+++HAA DFGNR   LP A+LHP+SVSDI++TIKHI+++GP ++LT+AARGHGHS+Q
Sbjct: 67  NFDNIYHAANDFGNRHHYLPSAILHPKSVSDISSTIKHIFEMGPATELTIAARGHGHSVQ 126

Query: 114 GQAQAHQGVVINMESLQGPKMQIHAGKYPYIDVSGGELWINILHESVKYGLAPKSWTDYL 173
           GQAQAH+GVV+NMESLQ PK  +H GK PY DVSGGELWINILHES+K+GLAPKSWTDYL
Sbjct: 127 GQAQAHRGVVVNMESLQAPKTIVHTGKMPYADVSGGELWINILHESLKHGLAPKSWTDYL 186

Query: 174 HLTVGGTLSNAGISGQAFRHGPQISNVYQLEVVTGKGEVVNCSEKQNGDLFHGVLGGLGQ 233
           HLTVGGTLSNAGISGQAFRHGPQI+NVYQLEVVTGKG+++ CSE QN DLF+GVLGGLGQ
Sbjct: 187 HLTVGGTLSNAGISGQAFRHGPQINNVYQLEVVTGKGDIITCSETQNADLFYGVLGGLGQ 246

Query: 234 FGIITRAQISLEPAPEQVKWIRVLYSDFA 262
           FGIITRA+ISLEPAP+ VKWIRVLYS+F+
Sbjct: 247 FGIITRARISLEPAPKMVKWIRVLYSEFS 275


>GSVIVT01009786001 assembled CDS
          Length = 579

 Score =  263 bits (673), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 132/226 (58%), Positives = 170/226 (75%), Gaps = 7/226 (3%)

Query: 42  SSLKTLSVDGHFTFD--DLHHAAKDFGNRFQLLPLAVLHPRSVSDIANTIKHIWQLGPHS 99
           + L  L VDGH + D  D+  A+ DFG   +  PLAVLHP S  D+A  +   +  G   
Sbjct: 80  TDLLRLEVDGHLSVDPSDVKTASVDFGMMNRAEPLAVLHPSSAEDVARLVGAAY--GSAH 137

Query: 100 QLTVAARGHGHSLQGQAQAHQGVVINMESLQGPK---MQIHAGKYPYIDVSGGELWINIL 156
            L+V+ARGHGHS+ GQAQ   GVVI M + +G +   +   + +  Y+D  GGELWI++L
Sbjct: 138 GLSVSARGHGHSINGQAQTSSGVVIEMSASKGVRQWGLPRVSEQSRYVDAWGGELWIDVL 197

Query: 157 HESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFRHGPQISNVYQLEVVTGKGEVVNCS 216
             ++++GLAPKSWTDYL+L+VGGTLSNAGISGQAF HGPQISNVY+L+VVTGKGE++ CS
Sbjct: 198 KTTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQAFNHGPQISNVYELDVVTGKGELLTCS 257

Query: 217 EKQNGDLFHGVLGGLGQFGIITRAQISLEPAPEQVKWIRVLYSDFA 262
           E+QN +LFH VLGGLGQFGIITRA+I LEPAP++V+WIRVLYS+F+
Sbjct: 258 EEQNSELFHAVLGGLGQFGIITRARIGLEPAPQRVRWIRVLYSNFS 303


>GSVIVT01015194001 assembled CDS
          Length = 494

 Score =  221 bits (563), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 106/170 (62%), Positives = 135/170 (79%), Gaps = 6/170 (3%)

Query: 99  SQLTVAARGHGHSLQGQAQAHQGVVINMESLQ--GPKMQIHAGKYP----YIDVSGGELW 152
           S  T+AARG GHSL GQA A  GVV++M SL+  G  + I   K P    Y DV G +LW
Sbjct: 64  SPFTIAARGRGHSLGGQAMAPNGVVVDMTSLKNSGAGIGIKVTKNPVSGSYADVGGHQLW 123

Query: 153 INILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFRHGPQISNVYQLEVVTGKGEV 212
           I++L  ++++GLAP SWTDYL+LTVGGTLSNAG SGQ FRHGPQISNV++++++TGKGE+
Sbjct: 124 IDVLQATLEHGLAPVSWTDYLYLTVGGTLSNAGGSGQTFRHGPQISNVHEMDIITGKGEL 183

Query: 213 VNCSEKQNGDLFHGVLGGLGQFGIITRAQISLEPAPEQVKWIRVLYSDFA 262
           V CS++ N DLF+ VLGGLGQFGIITRA+I LEPAP++VKW+R+LY DF+
Sbjct: 184 VTCSKETNSDLFYAVLGGLGQFGIITRARIPLEPAPKRVKWVRMLYDDFS 233


>GSVIVT01028599001 assembled CDS
          Length = 467

 Score =  218 bits (556), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 107/169 (63%), Positives = 131/169 (77%), Gaps = 6/169 (3%)

Query: 100 QLTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQ--IHAGKYP----YIDVSGGELWI 153
           QL +AARG GHSL+GQA A  GVV+ M SL        I   K P    Y DV G + WI
Sbjct: 39  QLHIAARGQGHSLRGQAMASHGVVVEMRSLNNCSCGSGIRVTKNPIWGSYADVGGEQQWI 98

Query: 154 NILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFRHGPQISNVYQLEVVTGKGEVV 213
           ++L  ++K+GLAP SWTDYL+LT+GGTLSNAGISGQ FRHGPQISNVY+++V+TGKGE+V
Sbjct: 99  DVLQATLKHGLAPVSWTDYLYLTIGGTLSNAGISGQTFRHGPQISNVYEMDVLTGKGELV 158

Query: 214 NCSEKQNGDLFHGVLGGLGQFGIITRAQISLEPAPEQVKWIRVLYSDFA 262
            CS+  N +LF  VLGGLGQFGIITRA+I+LEPAPE+VKWI++LY DF+
Sbjct: 159 TCSKDTNSELFFAVLGGLGQFGIITRARIALEPAPERVKWIQMLYDDFS 207


>GSVIVT01028610001 assembled CDS
          Length = 632

 Score =  210 bits (534), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 102/166 (61%), Positives = 127/166 (76%), Gaps = 6/166 (3%)

Query: 103 VAARGHGHSLQGQAQAHQGVVINMESLQGPKMQ--IHAGKYP----YIDVSGGELWINIL 156
            AARG GHSL+GQA A  GVV+ M SL        I   K P    Y DV G + WI++L
Sbjct: 207 TAARGQGHSLRGQAMASHGVVVEMRSLNNCSCGSGIRVTKNPIWGSYADVGGEQQWIDVL 266

Query: 157 HESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFRHGPQISNVYQLEVVTGKGEVVNCS 216
             ++K+GLAP SWTDYL+LT+GGTLSNAGISGQ FRHGPQISNVY+++V+TGKGE+V CS
Sbjct: 267 QATLKHGLAPVSWTDYLYLTIGGTLSNAGISGQTFRHGPQISNVYEMDVLTGKGELVTCS 326

Query: 217 EKQNGDLFHGVLGGLGQFGIITRAQISLEPAPEQVKWIRVLYSDFA 262
           +  N +LF  VLGGLGQFGII RA+I+L+PAP++VKWI++LY DF+
Sbjct: 327 KDTNSELFFAVLGGLGQFGIIIRARIALKPAPKRVKWIQMLYDDFS 372



 Score =  149 bits (377), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 81/160 (50%), Positives = 104/160 (65%), Gaps = 9/160 (5%)

Query: 56  DDLHHAAKDFGNRFQLL-PLAVLHPRSVSDIANTIKHIWQLGPHSQLTVAARGHGHSLQG 114
           D    A++DFG       P AVL+P S+ DIA+ +K  +        ++AARG GHSL+G
Sbjct: 51  DATRMASRDFGKLVHPPNPAAVLYPSSIEDIASLVKFSYNRS--FPFSIAARGQGHSLRG 108

Query: 115 QAQAHQGVVINMESLQGPKMQ--IHAGKYP----YIDVSGGELWINILHESVKYGLAPKS 168
           QA A  GVV+ M SL        I   K P    Y D  G +LWI++L  ++K+GLAP S
Sbjct: 109 QAMAPHGVVVEMRSLNNCSRGSGIRVTKNPISGSYADAGGEQLWIDVLQATLKHGLAPVS 168

Query: 169 WTDYLHLTVGGTLSNAGISGQAFRHGPQISNVYQLEVVTG 208
           WTDYL+LT+GGTLSNAGISGQ FRHGPQISNVY+++V+T 
Sbjct: 169 WTDYLYLTIGGTLSNAGISGQTFRHGPQISNVYEMDVLTA 208


>GSVIVT01006150001 assembled CDS
          Length = 412

 Score =  188 bits (478), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 91/151 (60%), Positives = 115/151 (76%), Gaps = 6/151 (3%)

Query: 118 AHQGVVINMESLQGPKMQ--IHAGKYP----YIDVSGGELWINILHESVKYGLAPKSWTD 171
           A  GVV+ M SL        I   K P    Y D  G +LWI++L  ++K+GLAP SWTD
Sbjct: 2   APHGVVVEMRSLNNCSRGSGIRVTKNPISGSYADAGGEQLWIDVLQATLKHGLAPVSWTD 61

Query: 172 YLHLTVGGTLSNAGISGQAFRHGPQISNVYQLEVVTGKGEVVNCSEKQNGDLFHGVLGGL 231
           YL+LT+GGTLSNAGISGQ FRHGPQISNVY+++V+TGKGE+V CS+  N +LF  VLGGL
Sbjct: 62  YLYLTIGGTLSNAGISGQTFRHGPQISNVYEMDVLTGKGELVTCSKDTNSELFFAVLGGL 121

Query: 232 GQFGIITRAQISLEPAPEQVKWIRVLYSDFA 262
           GQFGII RA+I+L+PAP++VKWI++LY DF+
Sbjct: 122 GQFGIIIRARIALKPAPKRVKWIQMLYDDFS 152


>GSVIVT01028586001 assembled CDS
          Length = 1374

 Score =  176 bits (447), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 95/194 (48%), Positives = 124/194 (63%), Gaps = 11/194 (5%)

Query: 44  LKTLSVDGHFTFDD--LHHAAKDFGNRFQLL-PLAVLHPRSVSDIANTIKHIWQLGPHSQ 100
           L++L +      D      A++DFG       P AVL+P S+ DIA+ +K  +       
Sbjct: 37  LQSLDIASRLRVDPNATRMASRDFGKLVHPPNPAAVLYPSSIEDIASLVKFAYNRS--FP 94

Query: 101 LTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQ--IHAGKYP----YIDVSGGELWIN 154
            ++AARG GHSL+GQA A  GVV+ M SL        I   K P    Y D  G +LWI+
Sbjct: 95  FSIAARGQGHSLRGQAMAPHGVVVEMRSLNNCSRGSGIRVTKNPISGSYADAGGEQLWID 154

Query: 155 ILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFRHGPQISNVYQLEVVTGKGEVVN 214
           +L  ++K+GLAP SWTDYL+LT+GGTLSNAGISGQ FRHGPQISNVY+++V+TGKGE+V 
Sbjct: 155 VLQATLKHGLAPVSWTDYLYLTIGGTLSNAGISGQTFRHGPQISNVYEMDVLTGKGELVT 214

Query: 215 CSEKQNGDLFHGVL 228
           CS+  N +LF  VL
Sbjct: 215 CSKDTNSELFFAVL 228


>GSVIVT01006081001 assembled CDS
          Length = 373

 Score =  176 bits (446), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 77/111 (69%), Positives = 99/111 (89%)

Query: 152 WINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFRHGPQISNVYQLEVVTGKGE 211
           WI++L  ++K+GLAP SWTDYL+LT+GGTLSNAGISGQ FRHGPQISNVY+++V+TGKGE
Sbjct: 3   WIDVLQATLKHGLAPVSWTDYLYLTIGGTLSNAGISGQTFRHGPQISNVYEMDVLTGKGE 62

Query: 212 VVNCSEKQNGDLFHGVLGGLGQFGIITRAQISLEPAPEQVKWIRVLYSDFA 262
           +V CS+  N +LF  VLGGLGQFGII RA+I+L+PAP++VKWI++LY DF+
Sbjct: 63  LVTCSKDTNSELFFAVLGGLGQFGIIIRARIALKPAPKRVKWIQMLYDDFS 113


>GSVIVT01035468001 assembled CDS
          Length = 472

 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 117/220 (53%), Gaps = 45/220 (20%)

Query: 42  SSLKTLSVDGHFTFDDLHHAAKDFGNRFQLLPLAVLHPRSVSDIANTIKHIWQLGPHSQL 101
           S  K L ++G      +  A+KDFG  + + P+A + P    D+   +    +    S L
Sbjct: 25  SLCKALELNGSIDCGSVGVASKDFGGLYAVKPVAFIRPSGADDLVRVVSAAAR---SSNL 81

Query: 102 TVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQIHAGKYPYIDVSGGELWINILHESVK 161
           TVAARG+GHS+ GQA A +G+VI+M +++     +  G   Y+DVSGG LW +       
Sbjct: 82  TVAARGNGHSINGQAMADRGLVIDMRTMEERIEVVSCGGADYVDVSGGALWEDT------ 135

Query: 162 YGLAPKSWTDYLHLTVGGTLSNAGISGQAFRHGPQISNVYQLEVVTGKGEVVNCSEKQNG 221
                                               SNV ++EVVTGK E + CSE QN 
Sbjct: 136 ------------------------------------SNVTEMEVVTGKAETLVCSETQNP 159

Query: 222 DLFHGVLGGLGQFGIITRAQISLEPAPEQVKWIRVLYSDF 261
           ++F  +LGGLGQFGIITRA++ L+PAP+ V+W+R++Y++F
Sbjct: 160 EIFFAILGGLGQFGIITRARVLLQPAPDMVRWMRLVYAEF 199


>GSVIVT01028598001 assembled CDS
          Length = 125

 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 64/101 (63%), Gaps = 5/101 (4%)

Query: 164 LAPKSWTDYLHLTVGGTLSNAGISGQAFRH--GPQISNVYQLEVVTGKGEVVNCSEKQNG 221
           +A  SWTDYL+L VGGTLSNAGISGQ F       +S  + L +V G   ++  +  Q  
Sbjct: 1   MASVSWTDYLYLAVGGTLSNAGISGQTFPMVLRSAMSMKWMLLLVKGNLWLIPNTNPQ-- 58

Query: 222 DLFHGVLGGLGQFGIITRAQISLEPAPEQVKWIRVLYSDFA 262
            LF  VL GLGQFGIITRA+I+LEP  ++V W  + Y  ++
Sbjct: 59  -LFFAVLRGLGQFGIITRARIALEPVQKRVSWTHMFYDKYS 98


>GSVIVT01022507001 assembled CDS
          Length = 566

 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 77/190 (40%), Gaps = 25/190 (13%)

Query: 72  LPLAVLHPRSVSDIANTIKHIWQLGPHSQLTVAARGHGHSLQGQA-QAHQGVVINMESLQ 130
           +P  V+ PRS  +++  +K         ++ +   G   S++G     H GV I+M  ++
Sbjct: 144 IPDVVVFPRSEEEVSKIVKSCDM----HKVPIVPYGGATSIEGHTLSPHGGVCIDMTLMK 199

Query: 131 GPKMQIHAGKYPYIDVSGGELWINILHESVKYGLAPKSWTDYLHL------TVGGTLSNA 184
             K  +H      + V  G  W+ +      YGL       +  L      T+GG  +  
Sbjct: 200 SVK-ALHVEDMDVV-VEPGIGWLELNEYLEPYGL-------FFPLDPGPGATIGGMCATR 250

Query: 185 GISGQAFRHGPQISNVYQLEVVTGKGEVVNCSEKQNG-----DLFHGVLGGLGQFGIITR 239
                A R+G    NV  L+VV   G+VV    +        DL   V+G  G  G+IT 
Sbjct: 251 CSGSLAVRYGTMRDNVINLKVVLANGDVVKTGSRARKSAAGYDLTRLVIGSEGTLGVITE 310

Query: 240 AQISLEPAPE 249
             + L+  P+
Sbjct: 311 VTLRLQKIPQ 320