Jatropha Genome Database

JcCB0224631.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0224631.10 - phase: 2 /partial
         (262 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01001155001 assembled CDS                                       258   2e-69
GSVIVT01001153001 assembled CDS                                       221   3e-58
GSVIVT01036724001 assembled CDS                                        52   3e-07

>GSVIVT01001155001 assembled CDS
          Length = 828

 Score =  258 bits (659), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 139/285 (48%), Positives = 188/285 (65%), Gaps = 30/285 (10%)

Query: 1   WYEECNLGAFGVSKRELLYAYYMAAASIFEPERSKERVAWAKTTILLRTIDAYFNDNSNN 60
           WY +C+LG FGVS++  L AY++AAA IFEPERS ER+AWAKT IL+  + +YF+  +  
Sbjct: 549 WYTQCHLGEFGVSRKASLLAYFLAAACIFEPERSIERLAWAKTAILVLAVRSYFSKET-- 606

Query: 61  SVEERKDFVQQFKHGVGAPAG-----LVNGRK-------------LETKTRQELVGIVLG 102
            +++R+ F+ +F +   +P+G      +NGR              L+ K+ +ELVG++LG
Sbjct: 607 FIKQRRAFLLKFGY---SPSGGDYMKKINGRGSDLNMTAKRPVGFLKNKSGEELVGLLLG 663

Query: 103 TLNDVSLDALVAHGTDISHSLRHAWEKWLTNWEKEGDRHQGEAELIVKTINLTTGRWVSE 162
           TLN +SLD LVAHG DI H LR  WE WL     EGD ++GEAEL+V+TINL  GR +SE
Sbjct: 664 TLNQLSLDTLVAHGRDIRHILRQTWEMWLMKHLDEGDGYRGEAELLVRTINLCAGRSLSE 723

Query: 163 ELLNYSSKYERFFQLTNRICHQLG----HHSKNKVYDRERST--TPEIESDMQELTQLVL 216
           ELL +  +Y R  QLTNRIC+ LG    H   N  Y+ E  +  +  +ESDMQELT++VL
Sbjct: 724 ELLAH-PQYRRLSQLTNRICNDLGLFTLHKGHNGTYNPENGSPMSHRVESDMQELTKIVL 782

Query: 217 QNSSDGMDSNIKQTFFTVVKSFYYTAVCDPGTINYHISKVLFEKV 261
           +N  DG++  IK+TF  V KSFYY A C P TI+ HI+KVLFE+ 
Sbjct: 783 ENYPDGINPEIKRTFEMVGKSFYYAAYCGPATISAHIAKVLFERA 827


>GSVIVT01001153001 assembled CDS
          Length = 784

 Score =  221 bits (563), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 128/270 (47%), Positives = 174/270 (64%), Gaps = 14/270 (5%)

Query: 1   WYEECNLGAFGVSKRELLYAYYMAAASIFEPERSKERVAWAKTTILLRTIDAYFNDNSNN 60
           W+   NL  FG+S+  LL AY++AAASIFEPERS ERVAWAK  +L+  + +YFN  +  
Sbjct: 519 WWTHSNLQEFGLSRETLLLAYFLAAASIFEPERSVERVAWAKAAVLVEAVASYFNKET-- 576

Query: 61  SVEERKDFVQQFKHGVGAPAGL---VNGRKLETKTRQELVGIVLGTLNDVSLDALVAHGT 117
            +++R+ F+ +F  G  A  G    +NG    +KT +EL G++L TLN +SLDA   HG+
Sbjct: 577 CIKQRRAFLLKF--GYSASGGRYRKINGSSNLSKTGEELAGLLLTTLNQLSLDAQELHGS 634

Query: 118 DISHSLRHAWEKWLTNWEKEGDRHQGEAELIVKTINLTTGRWVSEELLNYSSKYERFFQL 177
           DI   L   WE WLT    E D  QGEAE++V  INL +GR ++EELLN+   Y+    L
Sbjct: 635 DIHQLLHRTWEMWLTKNLAEEDGCQGEAEVLVDVINLCSGRSITEELLNHPL-YKHLLHL 693

Query: 178 TNRICHQLGHHSKNKVY------DRERSTTPEIESDMQELTQLVLQNSSDGMDSNIKQTF 231
           TN + HQL    ++K +      ++E   + ++E DMQEL QLVLQNS++ +D  IK+TF
Sbjct: 694 TNGVSHQLSPFYQHKAHIGSYNPEKESDVSSKVEPDMQELAQLVLQNSTEDIDPVIKRTF 753

Query: 232 FTVVKSFYYTAVCDPGTINYHISKVLFEKV 261
             V KSFYY A CDP TI+ HI+KVLFE+V
Sbjct: 754 LMVAKSFYYAAYCDPATIDSHIAKVLFERV 783


>GSVIVT01036724001 assembled CDS
          Length = 826

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 1   WYEECNLGAFGVSKRELLYAYYMAAASIFEPERSKERVAWAKTTILLRTIDAYFNDNSNN 60
           W  E  L     ++++L Y Y+ AAA+IF PE+S  R++WAK ++L   +D +F  +   
Sbjct: 525 WIIENRLDKLKFARQKLAYCYFSAAATIFSPEQSDARLSWAKNSVLTTVVDDFF--DIGG 582

Query: 61  SVEERKDFVQ 70
           S EE  + +Q
Sbjct: 583 SEEELLNLIQ 592