Jatropha Genome Database

JcCB0224181.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0224181.10 - phase: 0 
         (335 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013127001 assembled CDS                                       370   e-103
GSVIVT01009265001 assembled CDS                                       248   3e-66
GSVIVT01024352001 assembled CDS                                       146   1e-35
GSVIVT01038252001 assembled CDS                                        79   4e-15

>GSVIVT01013127001 assembled CDS
          Length = 378

 Score =  370 bits (949), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/314 (57%), Positives = 227/314 (72%), Gaps = 25/314 (7%)

Query: 1   MLTQMKRHRIGYALAPKKVQSFIQPSLISHANNHNIDLIPIDPSQSLVEQGPFDCIIHKL 60
           M  Q +R  IGYALAPKK +SFIQ SL+S A    IDLI ID  + LV+QGPFDC++HKL
Sbjct: 1   MAEQQRRFAIGYALAPKKRESFIQVSLVSLAQERGIDLIRIDTDKPLVDQGPFDCVLHKL 60

Query: 61  YGPDWKLQLERFSLENPNVPIIDSPDSIERLHNRISMLEVVNRLNIPRRSQVLEVPKQVV 120
           YG DWK QL+ FSL+NPN  I+D P +IERLHNRISML+VV+ L +   +    +PKQ+ 
Sbjct: 61  YGDDWKKQLQEFSLKNPNARILDPPAAIERLHNRISMLQVVSELKVESHNNTFGIPKQI- 119

Query: 121 VSDSENLKGNGLIGDLGFPLVAKPLVADGSAKSHKMYQIFDTEGLKRLDAPIILQNFVNH 180
                                  PLVADGSAKSHKM  +F+ +GLK+L  PI+LQ FVNH
Sbjct: 120 -----------------------PLVADGSAKSHKMSLVFNQDGLKKLGPPIVLQEFVNH 156

Query: 181 GGVIFKVYVAGDHVQCVKRKSLPDISQEKLATLKGALSFSQISNLTARGKNSGN-SGVVD 239
           GGVIFKVYV G++V+CVKRKSLPD+S+EKL +L+G+LSFSQ+SN+T R +N      ++ 
Sbjct: 157 GGVIFKVYVVGEYVKCVKRKSLPDVSEEKLNSLEGSLSFSQVSNITTRERNDDKYYKMMH 216

Query: 240 LDEVEMPPIGFVEEIAKAMREETGLNLFNFDVIRDAKDGNRYLVIDINYFPGYAKMPNYE 299
           L++ EMPP  F+ +IA+ +R    LNLFNFDVIRD + GNRYLVIDINYFPGYAKMP+YE
Sbjct: 217 LEDTEMPPQSFITDIARGLRRAMKLNLFNFDVIRDNRIGNRYLVIDINYFPGYAKMPSYE 276

Query: 300 SILTDFFLDLVGNK 313
           ++LTDFF D+V  K
Sbjct: 277 TVLTDFFWDIVNQK 290


>GSVIVT01009265001 assembled CDS
          Length = 315

 Score =  248 bits (632), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 140/319 (43%), Positives = 197/319 (61%), Gaps = 6/319 (1%)

Query: 5   MKRHRIGYALAPKKVQSFIQPSLISHANNHNIDLIPIDPSQSLVEQGPFDCIIHKLYGPD 64
           MK   +GYAL  KK +SF+QP L   A N  I  + ID ++SL EQGPFD ++HKL G +
Sbjct: 1   MKLVVVGYALTSKKTKSFLQPKLERLARNKGISFVAIDQNRSLSEQGPFDIVLHKLSGKE 60

Query: 65  WKLQLERFSLENPNVPIIDSPDSIERLHNRISMLEVVNRLNIPRRSQVLEVPKQVVVS-D 123
           W+  LE +   +P V ++D PD+I+ +HNR SML+ V  LN+      + VPKQ+VV  D
Sbjct: 61  WRQILEDYRQTHPEVTVLDPPDAIQHVHNRQSMLQDVADLNLSNSYGKVGVPKQLVVKRD 120

Query: 124 SENLKGNGLIGDLGFPLVAKPLVADGSAKSHKMYQIFDTEGLKRLDAPIILQNFVNHGGV 183
           + ++        L  PLVAKPLV DGSAKSH++   +D   L++L+ P++LQ FVNHGGV
Sbjct: 121 ASSIPDAVTKAGLKLPLVAKPLVVDGSAKSHELSLAYDQYSLQKLEPPLVLQEFVNHGGV 180

Query: 184 IFKVYVAGDHVQCVKRKSLPDISQEKLATLKGALSFSQISNLTARGKNSGNSGVVDLDEV 243
           +FKVY+ G+ ++ V+R SLPD+++ +L+   G   F ++S   A   ++     V     
Sbjct: 181 LFKVYIVGEAIKVVRRFSLPDVTKRELSKNAGVFRFPRVSCAAASADDADLDPCV----A 236

Query: 244 EMPPIGFVEEIAKAMREETGLNLFNFDVIRDAKDGNRYLVIDINYFPGYAKMPNYESILT 303
           E+PP   +E +A+ +R   GL LFN D+IR+    +R+ VIDINYFPGY KMP YE I T
Sbjct: 237 ELPPRPLLERLARELRRRLGLRLFNLDIIREHGTRDRFYVIDINYFPGYGKMPEYEHIFT 296

Query: 304 DFFLDLVGNKNSKEVLAGN 322
           DF L L    N K +   N
Sbjct: 297 DFLLSL-AESNYKRLSGSN 314


>GSVIVT01024352001 assembled CDS
          Length = 237

 Score =  146 bits (368), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 70/111 (63%), Positives = 83/111 (74%)

Query: 1   MLTQMKRHRIGYALAPKKVQSFIQPSLISHANNHNIDLIPIDPSQSLVEQGPFDCIIHKL 60
           M  Q +R  +GYALAPKKV SFIQPSL+ HA    IDL+ ID  + L+EQGPFDCIIHK+
Sbjct: 1   MAEQPRRFTVGYALAPKKVSSFIQPSLVDHAKQRGIDLVRIDLDKPLIEQGPFDCIIHKM 60

Query: 61  YGPDWKLQLERFSLENPNVPIIDSPDSIERLHNRISMLEVVNRLNIPRRSQ 111
              DWK QLE FS +NPNV IID PD+IE+LH+RISMLEVV  L IP  ++
Sbjct: 61  NDEDWKNQLEEFSTKNPNVVIIDPPDAIEQLHSRISMLEVVKELKIPEGTE 111



 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/73 (73%), Positives = 62/73 (84%)

Query: 242 EVEMPPIGFVEEIAKAMREETGLNLFNFDVIRDAKDGNRYLVIDINYFPGYAKMPNYESI 301
           E EMPP+ FV EIA  +R+  GLNLFNFDVIRDAK GNRYLVIDINYFPGYAKMP+YE++
Sbjct: 145 EAEMPPLNFVNEIAIGLRKAMGLNLFNFDVIRDAKLGNRYLVIDINYFPGYAKMPSYETV 204

Query: 302 LTDFFLDLVGNKN 314
           LTDFF D+V  K+
Sbjct: 205 LTDFFWDIVHRKS 217


>GSVIVT01038252001 assembled CDS
          Length = 515

 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 83/171 (48%), Gaps = 13/171 (7%)

Query: 136 LGFPLVAKPLVADGSAKSHKMYQIFDTEGLKRLDAPI--ILQNFVNHGGVIFKVYVAGDH 193
           L  P + KP VA G A +H M  +F  E  K L  P+  ++Q +V+H   +FK YV G+ 
Sbjct: 324 LSLPSIVKPQVACGVADAHSMAIVFRVEDYKDLSVPLPAVIQEYVDHSSTLFKFYVLGEK 383

Query: 194 VQCVKRKSLPDISQEKLATLKGALS---FSQISNLTARGKNSGNSGVVDLDEVEMPPIGF 250
           V    +KS P+    K    K  L    F  + +L   GK + N     +D      I  
Sbjct: 384 VFYAVKKSTPNAGTLKKLCEKNELKPLIFDSLKSLPT-GKENQNVNDQSID------IKL 436

Query: 251 VEEIAKAMREETGLNLFNFDVIRDAKDGNRYLVIDINYFPGYAKMPNYESI 301
           V + A  +R    L +F FDV+     G+ ++++D+NY P + ++P+  +I
Sbjct: 437 VTDAASWLRRVLDLTIFGFDVVIQEGSGD-HVIVDVNYLPSFKEVPDNMAI 486