Jatropha Genome Database

JcCB0224001.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0224001.20 + phase: 0 /partial
         (118 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003821001 assembled CDS                                       121   6e-29
GSVIVT01003820001 assembled CDS                                       121   8e-29
GSVIVT01003823001 assembled CDS                                       119   4e-28
GSVIVT01003831001 assembled CDS                                       116   2e-27
GSVIVT01003827001 assembled CDS                                       116   2e-27
GSVIVT01003826001 assembled CDS                                       113   2e-26
GSVIVT01003830001 assembled CDS                                       112   2e-26
GSVIVT01021651001 assembled CDS                                        96   3e-21
GSVIVT01015058001 assembled CDS                                        60   2e-10
GSVIVT01015059001 assembled CDS                                        57   2e-09
GSVIVT01003825001 assembled CDS                                        56   4e-09
GSVIVT01015060001 assembled CDS                                        54   1e-08

>GSVIVT01003821001 assembled CDS
          Length = 354

 Score =  121 bits (304), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 62/118 (52%), Positives = 75/118 (63%)

Query: 1   MPIHELTDPPPEASMKNGRLLQGSEFLGVGQLKAPEDIAYDGESGVIYTTCADGWIKRXX 60
           +P HE +  P      N R+LQGSE +G G L  PEDIAYD  S +IYT CADGW+KR  
Sbjct: 138 LPTHEFSQEPMPVPKLNPRMLQGSEMIGQGNLLGPEDIAYDANSHLIYTGCADGWVKRVT 197

Query: 61  XXXXXXXXXXXXXXXTGGRPLGLVLGKDNDVIVADAYKGLLKISRDGEIELLTDEAEG 118
                          TGGRPLG+ LG+  +V+VADA KGLL+IS DG ++LLTDEAEG
Sbjct: 198 LNESAANSVVHNWAFTGGRPLGVALGRVGEVLVADAEKGLLEISGDGVMKLLTDEAEG 255


>GSVIVT01003820001 assembled CDS
          Length = 820

 Score =  121 bits (303), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 62/118 (52%), Positives = 75/118 (63%)

Query: 1   MPIHELTDPPPEASMKNGRLLQGSEFLGVGQLKAPEDIAYDGESGVIYTTCADGWIKRXX 60
           +P HE +  P      N R+LQGSE +G G L  PEDIAYD  S +IYT CADGW+KR  
Sbjct: 47  LPTHEFSQEPMPVPKLNPRMLQGSEMIGQGNLLGPEDIAYDANSHLIYTGCADGWVKRVT 106

Query: 61  XXXXXXXXXXXXXXXTGGRPLGLVLGKDNDVIVADAYKGLLKISRDGEIELLTDEAEG 118
                          TGGRPLG+ LG+  +V+VADA KGLL+IS DG ++LLTDEAEG
Sbjct: 107 LNESAANSVVHNWAFTGGRPLGVALGRAGEVLVADAEKGLLEISGDGVMKLLTDEAEG 164



 Score =  117 bits (293), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 60/118 (50%), Positives = 75/118 (63%)

Query: 1   MPIHELTDPPPEASMKNGRLLQGSEFLGVGQLKAPEDIAYDGESGVIYTTCADGWIKRXX 60
           +P H  +  P      N RLL  SE +G+G+L  PEDIAYD  S +IYT CADGWIK+  
Sbjct: 484 LPTHVFSQEPMSVPRINSRLLHESEMIGLGKLLGPEDIAYDTNSHLIYTGCADGWIKKVT 543

Query: 61  XXXXXXXXXXXXXXXTGGRPLGLVLGKDNDVIVADAYKGLLKISRDGEIELLTDEAEG 118
                          TGGRPLG+VLG+  +V+VADA KGLL+IS DG ++LLT+EAEG
Sbjct: 544 LNDSAVNSVVHDWAFTGGRPLGVVLGRAGEVLVADADKGLLEISEDGVVKLLTNEAEG 601


>GSVIVT01003823001 assembled CDS
          Length = 417

 Score =  119 bits (297), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 61/118 (51%), Positives = 75/118 (63%)

Query: 1   MPIHELTDPPPEASMKNGRLLQGSEFLGVGQLKAPEDIAYDGESGVIYTTCADGWIKRXX 60
           +P H  +  P      N RLL  SE +G+G+L  PEDIAYD  S +IYT CADGWIK+  
Sbjct: 81  LPTHVFSQEPMSVPRINSRLLHESEMIGLGKLLGPEDIAYDTNSHLIYTGCADGWIKKVT 140

Query: 61  XXXXXXXXXXXXXXXTGGRPLGLVLGKDNDVIVADAYKGLLKISRDGEIELLTDEAEG 118
                          TGGRPLG+VLG+  +V+VADA KGLL+IS DG ++LLTDEAEG
Sbjct: 141 LNDSAVNSVVHDWAFTGGRPLGVVLGRAGEVLVADADKGLLEISEDGVVKLLTDEAEG 198


>GSVIVT01003831001 assembled CDS
          Length = 323

 Score =  116 bits (290), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/118 (50%), Positives = 75/118 (63%), Gaps = 4/118 (3%)

Query: 1   MPIHELTDPPPEASMKNGRLLQGSEFLGVGQLKAPEDIAYDGESGVIYTTCADGWIKRXX 60
           +PIHE +  P      N R+LQGSE  GVG+L  PEDIAY  +S +IYT CADGW+KR  
Sbjct: 74  VPIHEFSQQPMVVPKHNSRMLQGSEMTGVGKLLGPEDIAYHPDSHLIYTGCADGWVKR-- 131

Query: 61  XXXXXXXXXXXXXXXTGGRPLGLVLGKDNDVIVADAYKGLLKISRDGEIELLTDEAEG 118
                          TGGRPLG+ LG+   +IVADA KGLL+++ DG ++ LTDEAEG
Sbjct: 132 --VTLNDSVVQNWAFTGGRPLGVALGRHGQLIVADAEKGLLEVTTDGMVKTLTDEAEG 187


>GSVIVT01003827001 assembled CDS
          Length = 196

 Score =  116 bits (290), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/118 (50%), Positives = 76/118 (64%), Gaps = 4/118 (3%)

Query: 1   MPIHELTDPPPEASMKNGRLLQGSEFLGVGQLKAPEDIAYDGESGVIYTTCADGWIKRXX 60
           +PIHE +  P      N R+LQGSE +GVG+L  PEDIAY  +S +IYT CADGW+KR  
Sbjct: 47  VPIHEFSQQPMVVPKLNSRMLQGSEMIGVGKLLGPEDIAYHPDSHLIYTGCADGWVKR-- 104

Query: 61  XXXXXXXXXXXXXXXTGGRPLGLVLGKDNDVIVADAYKGLLKISRDGEIELLTDEAEG 118
                          TGGRPLG+ LG+   +IVADA KGLL+++ DG ++ LTDEAEG
Sbjct: 105 --VTLNDSVVQNWAFTGGRPLGVALGRHGQLIVADAEKGLLEVTTDGMVKTLTDEAEG 160


>GSVIVT01003826001 assembled CDS
          Length = 539

 Score =  113 bits (282), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/118 (49%), Positives = 76/118 (64%), Gaps = 4/118 (3%)

Query: 1   MPIHELTDPPPEASMKNGRLLQGSEFLGVGQLKAPEDIAYDGESGVIYTTCADGWIKRXX 60
           +PIHE +  P      N R+LQGSE +GVG+L +PEDIAY  +S +IYT C DGW+KR  
Sbjct: 207 VPIHEFSQQPMVVPKLNPRMLQGSEMIGVGKLLSPEDIAYHPDSHLIYTGCDDGWVKR-- 264

Query: 61  XXXXXXXXXXXXXXXTGGRPLGLVLGKDNDVIVADAYKGLLKISRDGEIELLTDEAEG 118
                          TGGRPLG+ LG+   ++VADA KGLL+++ DG ++ LTDEAEG
Sbjct: 265 --ITLNDSMVQNWAFTGGRPLGVALGRHGQLVVADAEKGLLEVTADGMVKTLTDEAEG 320



 Score = 72.8 bits (177), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 40/58 (68%)

Query: 1   MPIHELTDPPPEASMKNGRLLQGSEFLGVGQLKAPEDIAYDGESGVIYTTCADGWIKR 58
           +PIHE +  P      N R+LQGSE +GVG+L  PEDIAY  +S +IYT C DGW+KR
Sbjct: 78  VPIHEFSQQPMVVPKLNSRMLQGSEMIGVGKLLGPEDIAYHPDSHLIYTGCVDGWVKR 135


>GSVIVT01003830001 assembled CDS
          Length = 457

 Score =  112 bits (281), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/118 (49%), Positives = 76/118 (64%), Gaps = 4/118 (3%)

Query: 1   MPIHELTDPPPEASMKNGRLLQGSEFLGVGQLKAPEDIAYDGESGVIYTTCADGWIKRXX 60
           +PIHE +  P      N R+LQGSE +GVG+L +PEDIAY  +S +IYT C DGW+KR  
Sbjct: 125 VPIHEFSQQPMVVPKLNPRMLQGSEMIGVGKLLSPEDIAYHPDSHLIYTGCDDGWVKR-- 182

Query: 61  XXXXXXXXXXXXXXXTGGRPLGLVLGKDNDVIVADAYKGLLKISRDGEIELLTDEAEG 118
                          TGGRPLG+ LG+   ++VADA KGLL+++ DG ++ LTDEAEG
Sbjct: 183 --ITLNDSMVQNWAFTGGRPLGVALGRHGQLVVADAEKGLLEVTADGMVKTLTDEAEG 238


>GSVIVT01021651001 assembled CDS
          Length = 178

 Score = 96.3 bits (238), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/98 (53%), Positives = 64/98 (65%), Gaps = 4/98 (4%)

Query: 20  LLQGSEFLGVGQLKAPEDIAYDGESGVIYTTCADGWIKRXXXXXXXXXXXXXXXXXTGGR 79
           +LQGSE +G+G+L  PEDIAYD  S +IYT CADGWIK+                  GGR
Sbjct: 1   MLQGSEMIGLGKLLGPEDIAYDTNSHLIYTGCADGWIKK----VTLNDSVVHDWAFIGGR 56

Query: 80  PLGLVLGKDNDVIVADAYKGLLKISRDGEIELLTDEAE 117
           PLG+ L    +V+VADA KGLL+IS DG ++LL DEAE
Sbjct: 57  PLGVALDHAGEVLVADADKGLLEISEDGVVKLLIDEAE 94


>GSVIVT01015058001 assembled CDS
          Length = 382

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 6/109 (5%)

Query: 10  PPEASMKNGRLLQGSEFLGVGQLKAPEDIAYDGESGVIYTTCADGWIKRXXXXXXXXXXX 69
           P  A++   + LQ    +G G L  PED+ +DGE G++YT   DGWIKR           
Sbjct: 65  PSSAALLTNKKLQEVAKIGEGLLDKPEDVCFDGE-GILYTATRDGWIKRLHRNGSWEDWR 123

Query: 70  XXXXXXTGGRPLGLVLGKDNDVIVADAYKGLLKISRDGEIELLTDEAEG 118
                  GG  +G+   +   +IV D  KGLLK+  DG + +LT    G
Sbjct: 124 LIG----GGSLIGVTPTRTGGIIVCDIEKGLLKVGEDG-VSILTSHVNG 167


>GSVIVT01015059001 assembled CDS
          Length = 461

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/98 (36%), Positives = 47/98 (47%), Gaps = 6/98 (6%)

Query: 21  LQGSEFLGVGQLKAPEDIAYDGESGVIYTTCADGWIKRXXXXXXXXXXXXXXXXXTGGRP 80
           LQ    +G G L  PED+ +DGE G++YT   DGWIKR                  G   
Sbjct: 153 LQEVAKIGEGLLDKPEDVCFDGE-GILYTATRDGWIKRLHRNGSWEDWRLIG----GDTL 207

Query: 81  LGLVLGKDNDVIVADAYKGLLKISRDGEIELLTDEAEG 118
           LG+   +   ++V D  KGLLK+  DG + LLT    G
Sbjct: 208 LGVTTTRTGGIVVCDTQKGLLKVGEDG-VSLLTSHVNG 244


>GSVIVT01003825001 assembled CDS
          Length = 269

 Score = 55.8 bits (133), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 35/43 (81%)

Query: 76  TGGRPLGLVLGKDNDVIVADAYKGLLKISRDGEIELLTDEAEG 118
           TGGRPLG+ LG+   ++VADA KGLL+++ DG ++ LTDEAEG
Sbjct: 8   TGGRPLGVALGRHGQLVVADAEKGLLEVTADGMVKTLTDEAEG 50


>GSVIVT01015060001 assembled CDS
          Length = 368

 Score = 54.3 bits (129), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 53/119 (44%), Gaps = 11/119 (9%)

Query: 2   PIHELTDPPPEASMK--NGRLLQGSEFLGVGQLKAPEDIAYDGESGVIYTTCADGWIKRX 59
           P+H    PP  A++       LQ    +G G L  PED+ +D E G++YT   DGWIKR 
Sbjct: 42  PLHL---PPVSAAINLPTNNKLQEVTKIGEGFLNKPEDLCFD-EEGILYTATRDGWIKRL 97

Query: 60  XXXXXXXXXXXXXXXXTGGRPLGLVLGKDNDVIVADAYKGLLKISRDGEIELLTDEAEG 118
                            G   LG+   +   + V DA KGLLK+  DG +  LT    G
Sbjct: 98  HRNGSWEDWKLIG----GYALLGITTARAGGIFVCDAQKGLLKVGEDG-VSFLTSHVNG 151