Jatropha Genome Database

JcCB0224001.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0224001.10 + phase: 0 /TE/partial
         (469 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014094001 assembled CDS                                       106   2e-23
GSVIVT01019943001 assembled CDS                                        96   3e-20
GSVIVT01008224001 assembled CDS                                        80   2e-15
GSVIVT01015587001 assembled CDS                                        51   9e-07

>GSVIVT01014094001 assembled CDS
          Length = 677

 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 122/251 (48%), Gaps = 10/251 (3%)

Query: 2   YMGITCHWIDDDWKIQKRIIAFRVFDDKHTANNIYRIIVSILDEYKLTKKFFSISFDNAS 61
           Y+ +T H+ID+DWK+QK+I+ F   D  HT + +  +I+  L E+++  K FS++F + +
Sbjct: 211 YLCLTAHYIDEDWKLQKKILNFVSLDPSHTEDMLSEVIIKCLMEWEVGHKLFSMTFHDCA 270

Query: 62  ANTKSIIELK---NICEPNIG-GKFFHIRCACHVLNLCVQDGLKILESFISPIKKAISYL 117
            N    + +K   +   P +G G+   +RC  HVLNL VQD ++ L      I++++ Y+
Sbjct: 271 TNDDVALRVKEHFSQDRPLLGSGQLLDVRCVGHVLNLIVQDCIEALREVTHKIRESVRYV 330

Query: 118 WGHPQVMKSWAKFCKEN--NKRPKRFPRDVPTRWNSTYELLNESFSYKELLCFFVTNNIE 175
                 +  + +  ++   N +   F  D PT+WNSTY +L+    YK        ++  
Sbjct: 331 KTSQATLGKFNEIAQQVGINSQQNLF-LDCPTQWNSTYLMLDRVLEYKGAFSLLQEHDPG 389

Query: 176 -DINLYPQNWDICAKILDILKIFNDATYKFSGVYYPTSXLFLPMCINIVTALQEF--QND 232
             + L    W+  + I   +K+  +     S    PT+ ++ P   +I   L E+    D
Sbjct: 390 YTVALSDTEWEWASSITSYMKLLLEIIAVLSSNKCPTANIYFPEICDIHIQLIEWCKSPD 449

Query: 233 DLLKDCIFSMK 243
           D +      MK
Sbjct: 450 DFISSLALKMK 460


>GSVIVT01019943001 assembled CDS
          Length = 276

 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 119/228 (52%), Gaps = 22/228 (9%)

Query: 30  HTANNIYRIIVSILDEYKLTKKFFSISFDNASANTKSI-IELKNICEPN---IGGKFFHI 85
           HT   +  +++  L ++ + +K  +++ DN S+N   I I ++ +C  +   + GK FH+
Sbjct: 49  HTKEVLSDVLMDFLLDWNMDRKVSTVTVDNCSSNDGMINILVEKLCLSDSLLLNGKIFHM 108

Query: 86  RCACHVLNLCVQDGLKILESFISPIKKAISYLWGHPQVMKSWAKFCKENNKRPKRFP--- 142
           RCA HVLNL V++GL ++E  I  I+++++Y    P  M+ +     E+  R  R P   
Sbjct: 109 RCAAHVLNLIVKEGLDVIEVEIEKIRESVAYWSATPSRMEKF-----EDAARQLRIPCNK 163

Query: 143 ---RDVPTRWNSTYELLNESFSYKELLCFFVTNNIEDINLY---PQNWDICAKILDILKI 196
               D  TRWNSTY +L+ + +YK++  F      E   +     + W++  +I   LK+
Sbjct: 164 KLSLDCKTRWNSTYLMLSIAITYKDV--FPRLKQREKYYMVVPTEEEWNMAKEICGRLKL 221

Query: 197 FNDATYKFSGVYYPTSXLFLPMCINIVTALQEFQ--NDDLLKDCIFSM 242
           F + T  FSG  YPT+  F      I  AL ++   ++D++K    SM
Sbjct: 222 FYNITELFSGRNYPTANTFFIKVCEIKEALYDWLICSNDVVKTMASSM 269


>GSVIVT01008224001 assembled CDS
          Length = 680

 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 76/156 (48%)

Query: 2   YMGITCHWIDDDWKIQKRIIAFRVFDDKHTANNIYRIIVSILDEYKLTKKFFSISFDNAS 61
           YM +TCHWID++W  QK ++          +N IY  ++ +L  Y +  K  S + DN+ 
Sbjct: 219 YMSVTCHWIDENWCFQKVLLDICHIPYPCGSNEIYHSLIKVLKMYNIESKVLSCTHDNSQ 278

Query: 62  ANTKSIIELKNICEPNIGGKFFHIRCACHVLNLCVQDGLKILESFISPIKKAISYLWGHP 121
               +   LK   +    G F ++ CA   LN+ + DGL+  +  I+ I++ +  +    
Sbjct: 279 TAMHACHSLKEDLDGQKVGPFCYLPCAARTLNMIIDDGLRTTKPVITKIREFVLEMNSSS 338

Query: 122 QVMKSWAKFCKENNKRPKRFPRDVPTRWNSTYELLN 157
           ++ + + +F     +   + P D   RW+  Y++L+
Sbjct: 339 EISEDFIQFTTVYQEGSWKIPLDASARWSGNYQMLD 374


>GSVIVT01015587001 assembled CDS
          Length = 839

 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 90/211 (42%), Gaps = 15/211 (7%)

Query: 1   SYMGITCHWIDDDWKIQKRI--IAFRVFDDKHTANNIYRIIVSILDEYKLTKKFFSISFD 58
            Y+ +T H+ID DWK+ +RI  +    F D  TA      +   L ++ L  K FSI+  
Sbjct: 290 GYVFLTGHFIDMDWKLHRRILNVVMEPFTDSETA--FSHAVAVCLSDWSLENKLFSITI- 346

Query: 59  NASANTKSIIELK---NICEP-NIGGKFFHIRCACHVLNLCVQDGLKILESFISPIKKAI 114
           N   N   I  L+   +I  P  + G+F    C    L+    D L      I  I+ ++
Sbjct: 347 NQPLNEIGIEYLRAQLSIKNPLLLNGQFLVGNCIARTLSSMALDVLGAGRETIKKIRDSV 406

Query: 115 SYLWGHPQVMKSWAKFCKENNKRP--KRFPRDVPTRWNSTYELLNESFSYKELLCFFVTN 172
            Y+       + + +  K+  + P  K    D   +WN+TYE+L  +   KE+     T+
Sbjct: 407 KYVKTSESHEEKFLEL-KQQLQVPSTKSLFLDDQNQWNTTYEMLVAASELKEVFSCLDTS 465

Query: 173 NIEDINLYPQ--NWDICAKILDILKIFNDAT 201
           +  D    P   +W     +   LK+F DA 
Sbjct: 466 D-PDYKEAPSMDDWKQVETLCTYLKLFFDAA 495