Jatropha Genome Database

JcCB0223221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0223221.10 + phase: 0 /pseudo
         (269 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036171001 assembled CDS                                       304   3e-83
GSVIVT01036173001 assembled CDS                                       289   1e-78
GSVIVT01033433001 assembled CDS                                       159   2e-39
GSVIVT01013561001 assembled CDS                                       150   5e-37
GSVIVT01013560001 assembled CDS                                       149   2e-36
GSVIVT01001346001 assembled CDS                                        69   3e-12
GSVIVT01036175001 assembled CDS                                        51   5e-07

>GSVIVT01036171001 assembled CDS
          Length = 490

 Score =  304 bits (779), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 141/227 (62%), Positives = 184/227 (81%)

Query: 1   MELEKITQFLEHKTVLVTGATGFLAKVFLEKLLRVQPNVKKLYLLLRAADTSSVNQRFYN 60
           MEL  I +FLE+K++LVTGATGFLAK+F+E++LR QPNVKKL+LLLRA DT S  QR +N
Sbjct: 1   MELGSIVEFLENKSILVTGATGFLAKIFVERILRTQPNVKKLFLLLRAGDTKSATQRLHN 60

Query: 61  EVIGKDLFRVVKEKLGANLNSIIAKKIAIVPGDVSYEDLGAKDSSLREEMINDLDFILNF 120
           EVIGK+LF V++EK  ++ NS ++KK+  VPGD+S +DLG  DS+LREEM  ++D ++N 
Sbjct: 61  EVIGKELFWVLREKWASDFNSFVSKKLTPVPGDISCDDLGVTDSNLREEMWREVDIVVNL 120

Query: 121 AATTRFDERYDVALGTNTLGAKNVLCFAKNCLKLKLLIHVSTAYVCGESSGLIMEKPYQL 180
           AATT FDERYDVALG N LGA++VL FAK C+K+K+L+HVSTAYV GE SGLI+E+P+Q+
Sbjct: 121 AATTNFDERYDVALGINALGARHVLDFAKKCVKIKMLLHVSTAYVAGEQSGLILEQPFQM 180

Query: 181 GEALNGVLGLNIVEEKKLIDRKLNQLQREGATEANIKKAMIDMGIER 227
           GE LNG  GL+I EEKKL++ +L++LQ EGAT   +  AM D GI+R
Sbjct: 181 GETLNGTFGLDIEEEKKLMEERLDELQSEGATREAVTLAMKDFGIQR 227


>GSVIVT01036173001 assembled CDS
          Length = 490

 Score =  289 bits (739), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 138/227 (60%), Positives = 184/227 (81%)

Query: 1   MELEKITQFLEHKTVLVTGATGFLAKVFLEKLLRVQPNVKKLYLLLRAADTSSVNQRFYN 60
           MEL  I +FLE+K++LVTGATGFLAK+F+EK+LR+QPNVKKL+LLLRAADT S  QR +N
Sbjct: 1   MELGSIVEFLENKSILVTGATGFLAKIFVEKILRIQPNVKKLFLLLRAADTKSATQRLHN 60

Query: 61  EVIGKDLFRVVKEKLGANLNSIIAKKIAIVPGDVSYEDLGAKDSSLREEMINDLDFILNF 120
           EV+GK+LFRV+K+K G+NLNS I++K+  +PGD+S E+LG  + +LREE+  ++D ILN 
Sbjct: 61  EVLGKELFRVLKDKWGSNLNSFISEKVTPIPGDISCENLGVTNLNLREEIWREVDVILNL 120

Query: 121 AATTRFDERYDVALGTNTLGAKNVLCFAKNCLKLKLLIHVSTAYVCGESSGLIMEKPYQL 180
           AATT+FDERYDVALG NTLGA +VL F+K C+KLK+L+HVSTAYV GE  GLI+E P ++
Sbjct: 121 AATTKFDERYDVALGINTLGASHVLNFSKKCVKLKMLLHVSTAYVSGEREGLILESPLKM 180

Query: 181 GEALNGVLGLNIVEEKKLIDRKLNQLQREGATEANIKKAMIDMGIER 227
           G+ALNG  GL++ +EKKL++  LN+L    ATE  I   M ++G++R
Sbjct: 181 GKALNGASGLDVDKEKKLVEEGLNELNELQATEETISLTMKELGMKR 227


>GSVIVT01033433001 assembled CDS
          Length = 632

 Score =  159 bits (401), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 90/230 (39%), Positives = 138/230 (60%), Gaps = 11/230 (4%)

Query: 6   ITQFLEHKTVLVTGATGFLAKVFLEKLLRVQPNVKKLYLLLRAADTSSVNQRFYNEVIGK 65
           I  FL  K+ L+TGATGFLAKV +EK+LR +P+V K+YLL++A +  +  +R  NE+I  
Sbjct: 146 IDNFLRGKSFLITGATGFLAKVLIEKILRTEPDVGKIYLLIKAKNQEAAMERLKNEIINA 205

Query: 66  DLFRVVKEKLGANLNSIIAKKIAIVPGDVSYEDLGAKDSSLREEMINDLDFILNFAATTR 125
           ++F  +++  G +  + +  K+  V GDV    LG  +    E +  ++D I+N AA T 
Sbjct: 206 EVFDCLQQAYGKSYQAFMLSKLVPVAGDVCGSSLGL-EKDFAEAIAKEVDVIVNSAANTT 264

Query: 126 FDERYDVALGTNTLGAKNVLCFAKNCLKLKLLIHVSTAYVCGESSGLIMEKPYQLGEALN 185
           FDERYD+A+  NT G  +++ FAKNC KLKL + VSTAYV G+  G IMEKP+ +G+++ 
Sbjct: 265 FDERYDIAIDINTKGPCHLMNFAKNCKKLKLFLQVSTAYVNGQRQGRIMEKPFCIGDSI- 323

Query: 186 GVLGLNIVEEKKLIDRKLN-----QL---QREGATEANIKKAMIDMGIER 227
                NI E    +   LN     +L    +E    + + + M ++G+ER
Sbjct: 324 -ARESNISEAPPRLLPTLNIEAEIKLALDSKEAFKGSTLAQKMKELGLER 372


>GSVIVT01013561001 assembled CDS
          Length = 311

 Score =  150 bits (380), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 79/185 (42%), Positives = 117/185 (63%), Gaps = 3/185 (1%)

Query: 1   MELEKITQFLEHKTVLVTGATGFLAKVFLEKLLRVQPNVKKLYLLLRAADTSSVNQRFYN 60
           M LE  + F E KT  +TG TGFLAK  +EK+LR  P+V K+++L++A +  +   R   
Sbjct: 1   MVLEFFSSFQE-KTYFITGGTGFLAKAVVEKILRTAPDVGKIFVLIKAKNKEAAMDRLKT 59

Query: 61  EVIGKDLFRVVKEKLGANLNSIIAKKIAIVPGDVSYEDLGAKDSSLREEMINDLDFILNF 120
           E+I  +LF  +K++ G      I  K+A V G++   DLG   +S+  E+  ++D I+N 
Sbjct: 60  EIIDSELFECLKQRHGKYYQDFILSKLAPVVGNLCESDLGIDANSI-SEIAEEVDVIINS 118

Query: 121 AATTRFDERYDVALGTNTLGAKNVLCFA-KNCLKLKLLIHVSTAYVCGESSGLIMEKPYQ 179
           AA T F+ERYDV+L TN LG + ++ F  K C  L++ +HVSTAYV GE  G+IMEKP+ 
Sbjct: 119 AANTNFEERYDVSLSTNVLGPRRLMDFTNKYCKNLRVFLHVSTAYVSGEREGMIMEKPFH 178

Query: 180 LGEAL 184
           +GE +
Sbjct: 179 MGERI 183


>GSVIVT01013560001 assembled CDS
          Length = 571

 Score =  149 bits (376), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 77/180 (42%), Positives = 116/180 (64%), Gaps = 2/180 (1%)

Query: 6   ITQFLEHKTVLVTGATGFLAKVFLEKLLRVQPNVKKLYLLLRAADTSSVNQRFYNEVIGK 65
           I QFL  KT  +TGATG LAK  +EK+LR  P+V K+++L++A +  +   R   E+I  
Sbjct: 90  ILQFLAGKTYFITGATGLLAKAVVEKILRRAPDVGKIFILIKAKNKEAAVDRLKTEIINS 149

Query: 66  DLFRVVKEKLGANLNSIIAKKIAIVPGDVSYEDLGAKDSSLREEMINDLDFILNFAATTR 125
           +LF  +K++ G      +  K+A V G++   DLG  D++L  E+  ++D I+N AA T 
Sbjct: 150 ELFECLKQRHGKYYQDFMLSKLAPVVGNLCESDLGI-DANLISEIAEEVDVIINSAANTN 208

Query: 126 FDERYDVALGTNTLGAKNVLCFAKN-CLKLKLLIHVSTAYVCGESSGLIMEKPYQLGEAL 184
           F+ERYDV+L  NT+G   ++ FAK  C  L++ +HVSTAYV GE  G+I EKP+ +GE++
Sbjct: 209 FEERYDVSLHANTIGPCRLMDFAKKYCKNLRVFLHVSTAYVNGEREGMITEKPFYMGESI 268


>GSVIVT01001346001 assembled CDS
          Length = 104

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 57/101 (56%), Gaps = 1/101 (0%)

Query: 63  IGKDLFRVVKEKLGANLNSIIAKKIAIVPGDVSYEDLGAKDSSLREEMINDLDFILNFAA 122
           I  +LF+ +++  G +    +  K+  V GDV   +LG  D++   E+   +D I+N AA
Sbjct: 4   ICSELFKCLEQMHGESYTDFMMSKLVSVIGDVCKSNLGM-DATSATEIAKAVDVIVNSAA 62

Query: 123 TTRFDERYDVALGTNTLGAKNVLCFAKNCLKLKLLIHVSTA 163
            T  DERYDVAL TNT G   ++ FAK   K  L +HVST 
Sbjct: 63  NTILDERYDVALNTNTKGPSRLVSFAKKYKKPSLSVHVSTG 103


>GSVIVT01036175001 assembled CDS
          Length = 35

 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 22/35 (62%), Positives = 31/35 (88%)

Query: 1  MELEKITQFLEHKTVLVTGATGFLAKVFLEKLLRV 35
          MEL  + +FLE+K++LVTGATGFLAK+F+E +LR+
Sbjct: 1  MELGSVVEFLENKSILVTGATGFLAKIFVEMILRI 35