Jatropha Genome Database

JcCB0222931.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0222931.10 + phase: 0 /TE/partial
         (785 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028343001 assembled CDS                                        94   2e-19
GSVIVT01012382001 assembled CDS                                        94   2e-19
GSVIVT01010555001 assembled CDS                                        90   5e-18
GSVIVT01000641001 assembled CDS                                        83   4e-16
GSVIVT01015960001 assembled CDS                                        75   1e-13
GSVIVT01024357001 assembled CDS                                        65   2e-10
GSVIVT01011334001 assembled CDS                                        62   1e-09
GSVIVT01031724001 assembled CDS                                        62   1e-09
GSVIVT01018138001 assembled CDS                                        59   1e-08
GSVIVT01028612001 assembled CDS                                        57   3e-08

>GSVIVT01028343001 assembled CDS
          Length = 2295

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 40/61 (65%), Positives = 48/61 (78%)

Query: 680  MAQSACEIIWIRQLLEEIGFKSSLPAKLWCDNQVALHIASNPVFHKRTKHIEIDFHFIRE 739
            MA + CE+IW+R LL+E+ F      KL CDNQ ALHIASNPVFH+RTKHIE+D HFIRE
Sbjct: 1504 MALATCELIWLRHLLQELRFGKDEQMKLICDNQAALHIASNPVFHERTKHIEVDCHFIRE 1563

Query: 740  R 740
            +
Sbjct: 1564 K 1564


>GSVIVT01012382001 assembled CDS
          Length = 952

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 52/61 (85%)

Query: 680 MAQSACEIIWIRQLLEEIGFKSSLPAKLWCDNQVALHIASNPVFHKRTKHIEIDFHFIRE 739
           MA ++CE++W++ LL ++GF  + P KL+CDNQ A+HIA+NPVFH+RTKHIE+D HFIR+
Sbjct: 846 MAAASCEMVWLKNLLTDLGFSPTSPMKLFCDNQAAMHIAANPVFHERTKHIEVDCHFIRQ 905

Query: 740 R 740
           +
Sbjct: 906 Q 906


>GSVIVT01010555001 assembled CDS
          Length = 147

 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 41/77 (53%), Positives = 54/77 (70%), Gaps = 2/77 (2%)

Query: 385 LDVKNAFLHGDLQEEVYIEQPPGFIAQEELGKVCELRKSLYGLKQSPRAWFGRFCNVVHQ 444
           +DVKNAFL+GDL EEVY++ PPG     E  KVC LR++LYGLKQ+PRAWF +F + + +
Sbjct: 1   MDVKNAFLNGDLSEEVYMQPPPGLSV--ESNKVCHLRRALYGLKQAPRAWFAKFSSTIFR 58

Query: 445 FGMXKSTSDHSVFFRST 461
            G   S  D ++F R T
Sbjct: 59  LGYTASPYDSALFLRRT 75


>GSVIVT01000641001 assembled CDS
          Length = 947

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 100/211 (47%), Gaps = 46/211 (21%)

Query: 555 GGKLFDDLEMYKRLVGKLNYLTVTSPDIAYSVSVLSQFMSSPTVIHWEAXDKFCARXKVI 614
           GGK  D + +YK++VG L YLT T PDI +SVS++S++M +PT +H+ A  K C   + +
Sbjct: 227 GGKKVDSI-IYKQIVGSLMYLTATRPDIMHSVSLISRYMENPTELHFLAAKKIC---RYL 282

Query: 615 QVVASFTVIMGIWTLSVFRMRIGQVRRLIEDXLQDIVSLWVETXYRGGARNKIXSHDRVL 674
           Q    F +            + G+   LI          + ++ Y G   N+  +   V 
Sbjct: 283 QGTKDFGLF----------YKKGKRSDLIG---------FTDSDYAGDQDNRRSTSGYVF 323

Query: 675 NXN-------------IEMAQSACEII----------WIRQLLEEIGFKSSLPAKLWCDN 711
                           + ++ +  E +          W+R++LEE+  K      ++CDN
Sbjct: 324 MLGTGAVSWSSKKQPIVTLSTTEAEFVAATVCACQAIWLRKILEELHLKQVGATTIFCDN 383

Query: 712 QVALHIASNPVFHKRTKHIEIDFHFIRERYN 742
              + ++ NPV H R+KHI++ ++F+R+  N
Sbjct: 384 SSTIKLSKNPVLHGRSKHIDVKYYFLRDLSN 414


>GSVIVT01015960001 assembled CDS
          Length = 1205

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 42/58 (72%)

Query: 688 IWIRQLLEEIGFKSSLPAKLWCDNQVALHIASNPVFHKRTKHIEIDFHFIRERYNKVL 745
           +WIR+LLEE+    S P KL+CDN+  + +A NPV H RTKH+E+D HFI+E+ +  L
Sbjct: 1   MWIRRLLEELKMTGSSPMKLYCDNKAVISVAYNPVLHDRTKHVEVDKHFIKEKIDNGL 58


>GSVIVT01024357001 assembled CDS
          Length = 851

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 69/125 (55%), Gaps = 7/125 (5%)

Query: 1   RKKNRHLLEVAMALYSNEGPXTFLGGCXLYCYVFLINRMPS-SXLNGAI--PYXVLFPSK 57
            +KN+ ++E+A A+   +G   F     +   V+L+NR P+ + LN  +   +    PS 
Sbjct: 523 ERKNQTVMEMAKAMLYEKGLPKFFWVEAVNTVVYLLNRCPTKALLNKTLIEAWSGRNPSV 582

Query: 58  LLFPVKPRIFGCTCFVRDVRLQVSKLDPKSLRCIFLGYSWHQKGYRCFSPDLDRYLISVD 117
             F    ++FGC C+ +  + + SKLD  S +CIF+GYS   KGYR ++   ++ +IS  
Sbjct: 583 RHF----KVFGCLCYSQVPKERRSKLDETSEKCIFMGYSSQSKGYRLYNLKTNKLIISRY 638

Query: 118 VTFFE 122
           V F+E
Sbjct: 639 VIFYE 643


>GSVIVT01011334001 assembled CDS
          Length = 640

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 48/98 (48%), Gaps = 1/98 (1%)

Query: 435 FGRFCNVVHQFGMXKSTSDHSVFFRST-KTSXXXXXXXXXXXXXTGSDSAGIASLKSFLQ 493
           F  F  VV  FG     SDH++F + T K               T      I  LKS   
Sbjct: 11  FDHFTKVVKGFGYSWCHSDHTLFVKHTVKGRTAIIIVYVGDIILTKDHEEEIGKLKSIFA 70

Query: 494 TQFQTKDLGLLKYFLGIEVSWCKRGIFLSQRKYVLELL 531
            +F+ KDLG LKYF G+E++    GI +SQ KYVL+LL
Sbjct: 71  HEFEIKDLGNLKYFFGMEITRSNMGIVVSQCKYVLDLL 108


>GSVIVT01031724001 assembled CDS
          Length = 1135

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 1/79 (1%)

Query: 526  YVLELLKXTGKLGAKPCSAPMTPNLQLSIG-GKLFDDLEMYKRLVGKLNYLTVTSPDIAY 584
            Y+ +LL+  G   +K  ++PM     LSI  G  F+D  +Y+ LVG L Y T+T PDIAY
Sbjct: 950  YICDLLQRAGLSESKLVTSPMAVGHVLSIADGTRFEDPTLYRSLVGALQYCTITRPDIAY 1009

Query: 585  SVSVLSQFMSSPTVIHWEA 603
            +++   QFM +PT  H +A
Sbjct: 1010 TINKFFQFMHAPTSTHLQA 1028


>GSVIVT01018138001 assembled CDS
          Length = 98

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 44/83 (53%)

Query: 445 FGMXKSTSDHSVFFRSTKTSXXXXXXXXXXXXXTGSDSAGIASLKSFLQTQFQTKDLGLL 504
           FG   + SD S+F R T +              T SD+  I SL + L ++F  KDLG +
Sbjct: 16  FGFVSTKSDQSLFLRFTPSHITYVFVYVDDILVTSSDTTAITSLIAQLNSKFSLKDLGEV 75

Query: 505 KYFLGIEVSWCKRGIFLSQRKYV 527
            YFL I+VS+   G+ LSQ KY+
Sbjct: 76  HYFLVIQVSYTNNGLHLSQTKYI 98


>GSVIVT01028612001 assembled CDS
          Length = 3048

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 69/151 (45%), Gaps = 16/151 (10%)

Query: 1   RKKNRHLLEVAMALYSNEG-PXTFLGGCXLYCYVFLINRMPSSXLNGAIP---YXVLFPS 56
            +KNR ++ +  ++ S +  P TF      +  V ++NR P+  +    P   +  L PS
Sbjct: 618 ERKNRTIMNMVRSMLSAKKLPKTFWPEAVNWT-VHVLNRSPTFAVQNKTPEEAWGKLKPS 676

Query: 57  KLLFPVKPRIFGCTCFVRDVRLQVSKLDPKSLRCIFLGYSWHQKGYRCFSPDLDRYLISV 116
              F    R+FGC   V     + +KLD KS  C+ LG S   K YR + P   + +IS 
Sbjct: 677 VDYF----RVFGCLSHVHVPDSKRTKLDDKSFSCVLLGVSEESKAYRLYDPISQKIIISR 732

Query: 117 DVTFFENTPFFPSPIYKNE-------GEDGE 140
           DV F E+  +     Y+         G+DGE
Sbjct: 733 DVVFEEDKNWDWDKKYEEAIVCDLEWGDDGE 763