Jatropha Genome Database

JcCB0220081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0220081.10 - phase: 0 /partial
         (296 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025182001 assembled CDS                                       531   e-151

>GSVIVT01025182001 assembled CDS
          Length = 740

 Score =  531 bits (1369), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 257/296 (86%), Positives = 271/296 (91%)

Query: 1   DLATVDSILLRELPPVEDSDARLALKRLIDISMGVITPLSEQLTKPLPNAMVLVNLKEIA 60
           DLATVDSILLRELPPV+D+DARL LKRL+D+SMGVITPLSEQLTKPLPNAM LVNLKE++
Sbjct: 445 DLATVDSILLRELPPVDDNDARLTLKRLVDVSMGVITPLSEQLTKPLPNAMALVNLKELS 504

Query: 61  TGAYKLLPEGTRLVVSVRGDESYEELEILKDIDATMILHDLPFTEDKIGRVHAARRLFEF 120
           TGAYKLLPEGTRLVVSVRGDE YE+LEILK++DATMILHDLP TE+KI RVH+ARRLFE+
Sbjct: 505 TGAYKLLPEGTRLVVSVRGDEPYEDLEILKEVDATMILHDLPLTEEKISRVHSARRLFEY 564

Query: 121 LSDHALNFPVIHHIQFPNAIHRDDLVIGAGTNXXXXXXXXXXXXXXXEAPGQDFDFLRNT 180
           LSD+ALNFPVIHHIQFP  IHRDDLVIGAGTN               EAP QDFDFLRNT
Sbjct: 565 LSDNALNFPVIHHIQFPKGIHRDDLVIGAGTNAGALLVDGLGDGLLLEAPEQDFDFLRNT 624

Query: 181 SFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPG 240
           SFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISA+IREKTSHLPGVSIAIMGCIVNGPG
Sbjct: 625 SFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAQIREKTSHLPGVSIAIMGCIVNGPG 684

Query: 241 EMADADFGYVGGAPGKIDLYVGKTVVKRGIDMEGATDALIQLIKDHGRWVDPPAEE 296
           EMADADFGYVGGAPGKIDLYVGKTVVKRGI ME ATDALIQLIKDHGRWVDPPAEE
Sbjct: 685 EMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEHATDALIQLIKDHGRWVDPPAEE 740