Jatropha Genome Database

JcCB0219281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0219281.10 + phase: 0 /partial
         (147 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008037001 assembled CDS                                       284   9e-78
GSVIVT01020043001 assembled CDS                                       278   8e-76

>GSVIVT01008037001 assembled CDS
          Length = 166

 Score =  284 bits (727), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 136/147 (92%), Positives = 141/147 (95%)

Query: 1   EVHDYLKTLCPDLHITRGEYDEEMRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQ 60
           EVHDYLKTLCPD+HITRGEYDEE RYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQ
Sbjct: 20  EVHDYLKTLCPDMHITRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQ 79

Query: 61  RQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVY 120
           RQLDVDILVTGHTH+FTAYKHEGGVVINPGSATGA+SSITYDVNPSFVLMDIDGLRVVVY
Sbjct: 80  RQLDVDILVTGHTHRFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVY 139

Query: 121 VYELIDGEVKVDKIDFKKTSTTPHAAH 147
           VYELIDGEVKVDKIDFKKT+ T  +  
Sbjct: 140 VYELIDGEVKVDKIDFKKTAATTRSTQ 166


>GSVIVT01020043001 assembled CDS
          Length = 190

 Score =  278 bits (710), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 134/145 (92%), Positives = 140/145 (96%)

Query: 1   EVHDYLKTLCPDLHITRGEYDEEMRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQ 60
           EVHDYLK+LCPD+H+TRGEYDE+ RY ETKTLTIGQFKLG+CHGHQVIPWGDLDSLAMLQ
Sbjct: 45  EVHDYLKSLCPDMHVTRGEYDEDSRYLETKTLTIGQFKLGVCHGHQVIPWGDLDSLAMLQ 104

Query: 61  RQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVY 120
           RQLDVDILVTGHTHQF AYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVY
Sbjct: 105 RQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVY 164

Query: 121 VYELIDGEVKVDKIDFKKTSTTPHA 145
           VYELIDGEVKVDKIDFKKT+TT  A
Sbjct: 165 VYELIDGEVKVDKIDFKKTATTNSA 189