Jatropha Genome Database

JcCB0218961.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0218961.10 + phase: 2 /partial
         (699 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007621001 assembled CDS                                       931   0.0  
GSVIVT01000550001 assembled CDS                                       193   2e-49
GSVIVT01014835001 assembled CDS                                        82   9e-16

>GSVIVT01007621001 assembled CDS
          Length = 601

 Score =  931 bits (2405), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/599 (75%), Positives = 504/599 (84%), Gaps = 22/599 (3%)

Query: 123 MGCTARVWLDAQLDRYGKMRFLADSDSEITRGFCACLLSVLDGAAPEEVLSVKTENLAAL 182
           MGCTA+VWL+ ++D  G+MRF ADSDSEIT+GFC+CL+ VLDGAAPEEVL++KT++LAAL
Sbjct: 1   MGCTAQVWLEVKMDGEGRMRFAADSDSEITKGFCSCLIWVLDGAAPEEVLALKTDDLAAL 60

Query: 183 NVGLPGGERSRVNTWHNVLVSMQKRTRKLVAEREGKQLVDPFPSLAVTSEGIQAKGSYAE 242
           NVGLPG   SRVNTWHNVL+ M KRT+ LVAER GK   DPFPSL + ++GI AKGSYAE
Sbjct: 61  NVGLPGAGHSRVNTWHNVLIVMHKRTKALVAERAGKPRADPFPSLVINADGIHAKGSYAE 120

Query: 243 AQARYLYPDESKVRELVNVLKEKKIGVVAHFYMDPEVQGVLTAAQKLWPHIHISDSLVMA 302
           AQAR+L+P+E KV+ELVNVLKEKKIGVVAHFYMDPEVQGVLTAAQK WPHI+ISDSL+MA
Sbjct: 121 AQARFLFPEELKVKELVNVLKEKKIGVVAHFYMDPEVQGVLTAAQKEWPHIYISDSLIMA 180

Query: 303 DSAVKMAKAGCKFITVLGVDFMSENVRAILDQAGFGEVGVYRMSRERIGCSLADAASSPA 362
           D AVKMAKAGC+FI VLGVDFM+ENVRAILDQAGFGEVGVYRMS ERIGCSLADAA++PA
Sbjct: 181 DMAVKMAKAGCQFIAVLGVDFMAENVRAILDQAGFGEVGVYRMSNERIGCSLADAAATPA 240

Query: 363 YMNYLEAASGSPHSLHVVYINTSLETKAYAHELVPTITCTSSNVVQTILQAFAQIPDLNV 422
           YMNYLEAAS SP +LHVVYINTSLETKAYAHELVPTITCTSSNVVQTILQAFAQ+P+LN+
Sbjct: 241 YMNYLEAASASPPALHVVYINTSLETKAYAHELVPTITCTSSNVVQTILQAFAQVPNLNI 300

Query: 423 WYGPDSYMGANIAKLFQQMTVMTDDEIA---------------------EDGTCIVHHLF 461
           WYGPD+YMGANI +L QQMT MTD+EIA                     +DGTCIVHHLF
Sbjct: 301 WYGPDTYMGANIRELLQQMTTMTDEEIAVIHPQHNRDSIKSLLSHLHYYQDGTCIVHHLF 360

Query: 462 GNEVVEKINEMYCDAFLTAHLEVPGEMFSLAMEAKRRGMGVVGSTQNILDFIKQRVQEAL 521
           G+EVVEKINEMYCDAFLTAHLEVPGEMFSLAMEAKRRG GVVGSTQNILDFIKQRVQE+L
Sbjct: 361 GHEVVEKINEMYCDAFLTAHLEVPGEMFSLAMEAKRRGTGVVGSTQNILDFIKQRVQESL 420

Query: 522 DRNVNDHLQFVLGTESGMITSIVAAVQHLL-GSAGSSAGAKINVEIVFPVXXXXXXXXXX 580
           D+N NDHLQFVLGTESGM+TSIVAAV+ LL  +  SS  A + VEIVFPV          
Sbjct: 421 DKNRNDHLQFVLGTESGMVTSIVAAVRTLLGSAKSSSGSADVTVEIVFPVSSESLTKTSS 480

Query: 581 XXXXXXXXXXAGDFALPVVPGVASGEGCSLHGGCASCPYMKMNSLDSLLKVCEHLPDEKN 640
                      G F LPV+PGVASGEGCS+HGGCASCPYMKMNSL SLLKVC HLP EK 
Sbjct: 481 NSYLGRNSAEMGGFILPVIPGVASGEGCSIHGGCASCPYMKMNSLSSLLKVCHHLPHEKE 540

Query: 641 VIAEYEAERFKLQTPSGKSIADVGCEPILHMRHFQMTKEMPEKLVNEVLLSNGNGRPIS 699
           V+++YEA RF LQTP+G SIADVGCEPIL+MRHFQ TKE+PEKLV+++L S+ NGR  S
Sbjct: 541 VLSDYEAGRFHLQTPNGNSIADVGCEPILNMRHFQATKELPEKLVSQILHSHSNGRSTS 599


>GSVIVT01000550001 assembled CDS
          Length = 284

 Score =  193 bits (491), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 102/192 (53%), Positives = 125/192 (65%), Gaps = 27/192 (14%)

Query: 29  HETQYSSFSFKSLKCIPSDSVPNSPTNPNISRFSCSAVTFSPSPPAEFVPDKLLHLITEF 88
           H+    +  FKSLKC+             IS  S +AV             +L  L +EF
Sbjct: 36  HQQNKRNLLFKSLKCVL------------ISHPSLAAV-------------RLRSLASEF 70

Query: 89  QSITEPINRVKRVIHYASLLAPFPESSRVDSNRVMGCTARVWLDAQLDRYGKMRFLADSD 148
             +TEPI+RVKR++HYA LL PF ES+RV +NRV GCTA VWLD +LD +G  RF  DSD
Sbjct: 71  TGLTEPIDRVKRLLHYAELLPPFDESARVPANRVTGCTAEVWLDVRLDEFGGTRFAVDSD 130

Query: 149 SEITRGFCACLLSVLDGAAPEEVLSVKTENLAALNVGLPGGER--SRVNTWHNVLVSMQK 206
           SEIT+GFC+CL+ VLDGAAPEEVL +K E+L  +NVG+  G R  SRVN WHN+L SMQK
Sbjct: 131 SEITKGFCSCLIRVLDGAAPEEVLKMKAEDLMEMNVGVGLGVRAHSRVNAWHNILTSMQK 190

Query: 207 RTRKLVAEREGK 218
           RT  LVAERE +
Sbjct: 191 RTEALVAERERR 202


>GSVIVT01014835001 assembled CDS
          Length = 407

 Score = 82.0 bits (201), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 76/143 (53%), Gaps = 3/143 (2%)

Query: 73  PAEFVPDKLLHLITEFQSITEPINRVKRVIHYASLLAPFPESSRVDSNRVMGCTARVWLD 132
           P E +P KL  ++  FQ++ EP  + ++++ Y   L P     +   N+V GC ++VW+ 
Sbjct: 146 PIEDLPPKLQEIVKLFQAVEEPKAKYQQLLFYGKNLTPLDAQYKTTENKVQGCVSQVWVR 205

Query: 133 AQLDRYGKMRFLADSDSEITRGFCACLLSVLDGAAPEEVLSVKTENLAALNVGLPGG-ER 191
           A LD    + F ADSDS +T+G  A L+  L G   EEV+ V  + +  L  GL      
Sbjct: 206 AYLDSDKNVVFEADSDSVLTKGLAALLVQGLSGRPVEEVVRVSPDFVVLL--GLQQSLTP 263

Query: 192 SRVNTWHNVLVSMQKRTRKLVAE 214
           SR N + N+L  MQK+  +L  E
Sbjct: 264 SRNNGFLNMLKLMQKKALELYIE 286