Jatropha Genome Database
- JcCB0217501.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0217501.10 + phase: 1 /pseudo/partial
(345 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01025282001 assembled CDS 436 e-123
GSVIVT01025879001 assembled CDS 115 4e-26
GSVIVT01025883001 assembled CDS 111 6e-25
GSVIVT01037549001 assembled CDS 107 6e-24
GSVIVT01025881001 assembled CDS 62 5e-10
>GSVIVT01025282001 assembled CDS
Length = 1301
Score = 436 bits (1122), Expect = e-123, Method: Compositional matrix adjust.
Identities = 206/271 (76%), Positives = 233/271 (85%), Gaps = 2/271 (0%)
Query: 42 QETNFQGDGSITHYGQQLQYCTLTQLWNELKLSCNLMKAREDTKQYNLHNRWKKRGVALV 101
+E NFQ +G +THYGQQLQ+ TL ++WNELK SC +KAR + Q+NL NRWKKRGVA+V
Sbjct: 911 REINFQSEGCVTHYGQQLQHFTLPRVWNELKSSCEFLKARGEVDQFNLQNRWKKRGVAMV 970
Query: 102 PTKFGISFTTKFMNQAGALVHVYTDGTVLVTHGGVEMGQGLHTKVAQIAASVFNIPLSSV 161
PTKFGISFTTKFMNQAGALVHVYTDGTVLVTHGGVEMGQGLHTKVAQ+AAS FNIPLSSV
Sbjct: 971 PTKFGISFTTKFMNQAGALVHVYTDGTVLVTHGGVEMGQGLHTKVAQVAASSFNIPLSSV 1030
Query: 162 FISETSTDKVPNXXXXXXXXXXDMYGAAVLDACEQIKARMEPVASKHNFSSFAELASACY 221
FISETSTDKVPN DMYGAAVLDACEQIKARMEP+ASK NFSSFAEL +ACY
Sbjct: 1031 FISETSTDKVPNSTPTAASASSDMYGAAVLDACEQIKARMEPIASKRNFSSFAELVTACY 1090
Query: 222 IQRIDLSAHGFYITPEIGFDWSTGKGNPFRYYTYGAAFAEVEIDTLTGDFHTRAADVILD 281
++RIDLSAHGFYITP+I FDW TGKG+PF Y+TYGA+FAEVEIDTLTGDFHTR A+V LD
Sbjct: 1091 LERIDLSAHGFYITPDIHFDWKTGKGSPFSYFTYGASFAEVEIDTLTGDFHTRVANVFLD 1150
Query: 282 LGYSLNPAIDVGQV--PFFLGLPFXAMHDLE 310
LG+S+NPAIDVGQ+ F GL + A+ +L+
Sbjct: 1151 LGHSINPAIDVGQIEGAFVQGLGWVALEELK 1181
>GSVIVT01025879001 assembled CDS
Length = 1380
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 131/262 (50%), Gaps = 30/262 (11%)
Query: 56 GQQLQYCTLTQLWNELKLSCNLMKAREDTKQYNLHNRWKKRGVALVPTKFGISFTTKFMN 115
G+ ++Y TL +W++L S + + + KQ+N+ N+W+KRG++ VP +S +
Sbjct: 991 GEHVEY-TLPLIWDKLATSSSFKERTDMIKQFNMCNKWQKRGISRVPIVHEVS-----LK 1044
Query: 116 QAGALVHVYTDGTVLVTHGGVEMGQGLHTKVAQIAA-SVFNIP-------LSSVFISETS 167
V + +DG+V V GG+E+GQGL TKV Q+ A ++ +I L V + ++
Sbjct: 1045 ATPGKVSILSDGSVAVEVGGIELGQGLWTKVKQMTAFALISIGCDGMGDFLEKVRVIQSD 1104
Query: 168 TDKVPNXXXXXXXXXXDMYGAAVLDACEQIKARMEPVASK----HNFSSFAELASACYIQ 223
T + + A+ C + R+ P+ + + L Q
Sbjct: 1105 TLSLIQGGLTAGSTTSECSCEAIRLCCNMLVERLNPIKERLQEQMGSVEWGTLILQAQSQ 1164
Query: 224 RIDLSAHGFYITPEIGFDWSTGKGNPFRYYTYGAAFAEVEIDTLTGDFHTRAADVILDLG 283
++LSA +Y+ D+S+ F+Y YGAA +EVE++ LTG +D+I D G
Sbjct: 1165 AVNLSASSYYVP-----DFSS-----FQYLNYGAAVSEVEVNLLTGQTTILQSDIIYDCG 1214
Query: 284 YSLNPAIDVGQV--PFFLGLPF 303
SLNPA+D+GQ+ F G+ F
Sbjct: 1215 QSLNPAVDLGQIEGAFVQGIGF 1236
>GSVIVT01025883001 assembled CDS
Length = 771
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 127/262 (48%), Gaps = 31/262 (11%)
Query: 56 GQQLQYCTLTQLWNELKLSCNLMKAREDTKQYNLHNRWKKRGVALVPTKFGISFTTKFMN 115
G+ +Y TL +W++L S + + E KQ+N+ N+W+KRG++ VP +S +
Sbjct: 405 GEPFEY-TLPSIWDKLATSSSFKERTEKIKQFNMCNKWRKRGISRVPIVHEVS-----LR 458
Query: 116 QAGALVHVYTDGTVLVTHGGVEMGQGLHTKVAQIAASVFNIP--------LSSVFISETS 167
V + +DG+V V GG+E+GQGL TKV Q+AA + L V + ++
Sbjct: 459 PTPGKVSILSDGSVAVEVGGIELGQGLWTKVKQMAAFALSSIQCDGMGDFLEKVRVIQSD 518
Query: 168 TDKVPNXXXXXXXXXXDMYGAAVLDACEQIKARMEPVASK----HNFSSFAELASACYIQ 223
T + + A+ C + R+ P+ K ++ L Q
Sbjct: 519 TLSLIQGGLTAGSTTSESTCEAIRLCCNMLVERLIPIKEKLQEQMGSVKWSTLILQAQSQ 578
Query: 224 RIDLSAHGFYITPEIGFDWSTGKGNPFRYYTYGAAFAEVEIDTLTGDFHTRAADVILDLG 283
++LSA +Y+ D+S+ RY YGAA +E I+ LTG+ +D+I D G
Sbjct: 579 AVNLSASSYYVP-----DFSS-----MRYLNYGAAVSEA-INLLTGETTILQSDIIYDCG 627
Query: 284 YSLNPAIDVGQV--PFFLGLPF 303
SLNPA+D+GQ+ F G+ F
Sbjct: 628 QSLNPAVDLGQIEGAFVQGIGF 649
>GSVIVT01037549001 assembled CDS
Length = 1219
Score = 107 bits (268), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 127/266 (47%), Gaps = 34/266 (12%)
Query: 56 GQQLQYCTLTQLWNELKLSCNLMKAREDTKQYNLHNRWKKRGVALVPTKFGISFTTKFMN 115
G+ + Y TL +W++L S L + E KQ+N+ N+W+KRG++ VP +S +
Sbjct: 848 GEPVDY-TLPSIWDKLASSSRLKQRTEMIKQFNMCNKWQKRGISQVPIVHEVS-----LR 901
Query: 116 QAGALVHVYTDGTVLVTHGGVEMGQGLHTKVAQIAASVFNIP--------LSSVFISETS 167
V + +DG+V V GG+E+GQGL TKV Q+AA + L V + ++
Sbjct: 902 PTPGKVSILSDGSVAVEVGGIELGQGLWTKVKQMAAFALSSIQCDGMGDFLEKVRVIQSD 961
Query: 168 TDKVPNXXXXXXXXXXDMYGAAVLDACEQIKARMEPVASK----HNFSSFAELASACYIQ 223
T + + A+ C + R+ P + + L Q
Sbjct: 962 TLSLIQGGFTAGSTTSESSCEAIRLCCNILVERLTPTKERLQEQMGSVEWGTLILQAQSQ 1021
Query: 224 RIDLSAHGFYITPEIGFDWSTGKGNPFRYYTYGAAFAE----VEIDTLTGDFHTRAADVI 279
++LSA +Y+ D+S+ +Y YGAA +E VE++ LTG+ +D+I
Sbjct: 1022 AVNLSASSYYVP-----DFSS-----MKYLNYGAAVSEAMSQVEVNLLTGETTILQSDII 1071
Query: 280 LDLGYSLNPAIDVGQV--PFFLGLPF 303
D G SLNPA+D+GQ+ F G+ F
Sbjct: 1072 YDCGQSLNPAVDLGQIEGAFVQGIGF 1097
>GSVIVT01025881001 assembled CDS
Length = 1096
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 16/121 (13%)
Query: 189 AVLDACEQIKARMEPVASK----HNFSSFAELASACYIQRIDLSAHGFYITPEIGFDWST 244
A+ C + R+ P+ + + L Q ++LSA +Y+ D+S+
Sbjct: 864 AIRLCCNMLVKRLTPIKERLQEQMGSVEWGTLILQAQSQAVNLSASSYYVP-----DFSS 918
Query: 245 GKGNPFRYYTYGAAFAEVEIDTLTGDFHTRAADVILDLGYSLNPAIDVGQV--PFFLGLP 302
F+Y YGAA +EVE++ LTG +D+I D G SLNPA+D+GQ+ F G+
Sbjct: 919 -----FQYLNYGAAVSEVEVNLLTGQTTILQSDIIYDCGQSLNPAVDLGQIEGAFVQGIG 973
Query: 303 F 303
F
Sbjct: 974 F 974