Jatropha Genome Database

JcCB0217351.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0217351.10 + phase: 0 /partial
         (158 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036499001 assembled CDS                                       174   2e-44
GSVIVT01036037001 assembled CDS                                        85   2e-17
GSVIVT01025065001 assembled CDS                                        49   7e-07
GSVIVT01003473001 assembled CDS                                        48   2e-06

>GSVIVT01036499001 assembled CDS
          Length = 438

 Score =  174 bits (441), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/142 (65%), Positives = 106/142 (74%), Gaps = 7/142 (4%)

Query: 24  GLEFDSSKPTYSYNGSVSISSMDVGVV-----QDSTMSEISIS--HSRTPKGTIDLFSGP 76
           G+E++SSK  YSYN S+S S     +      + +TMS+ISIS  H R PKGTIDLFSGP
Sbjct: 297 GMEYESSKAAYSYNPSISHSVSVSSMDVGVVPEATTMSDISISISHPRPPKGTIDLFSGP 356

Query: 77  PMQMPSQLSPRDREARVLRYXXXXXXXXXXXXIRYASRKAYAETRPRIKGRFAKRTDVDF 136
           P+QMP+QL+P DREARVLRY            IRYASRKAYAETRPRIKGRFAKRTDV+ 
Sbjct: 357 PIQMPTQLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEV 416

Query: 137 EVDQMFSTTLMTETGYSIVPSF 158
           EVDQMFSTTLM E+GY IVPSF
Sbjct: 417 EVDQMFSTTLMAESGYGIVPSF 438


>GSVIVT01036037001 assembled CDS
          Length = 307

 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/71 (60%), Positives = 49/71 (69%), Gaps = 2/71 (2%)

Query: 88  DREARVLRYXXXXXXXXXXXXIRYASRKAYAETRPRIKGRFAKRTDVDFEVDQMFSTTLM 147
           DREARVLRY            IRYASRKAYAETRPRIKGRFAKR+++  EVD   S  L 
Sbjct: 239 DREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSEI--EVDYSSSGALT 296

Query: 148 TETGYSIVPSF 158
            ++GY +VPSF
Sbjct: 297 ADSGYGVVPSF 307


>GSVIVT01025065001 assembled CDS
          Length = 251

 Score = 49.3 bits (116), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 7/89 (7%)

Query: 47  VGVVQDSTMSEISISHSRTPKGTIDLFSGPPMQMPSQLSPRDREARVLRYXXXXXXXXXX 106
           + ++Q     EISIS+  +      +  G  M   S+ SP +++ R+ RY          
Sbjct: 135 INMMQHHHRPEISISNDTS------IIEGM-MTKASRYSPEEKKERIERYRSKRNQRNFN 187

Query: 107 XXIRYASRKAYAETRPRIKGRFAKRTDVD 135
             I+YA RK  A++RPRI+GRFA+  +++
Sbjct: 188 KKIKYACRKTLADSRPRIRGRFARNEEIE 216


>GSVIVT01003473001 assembled CDS
          Length = 247

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 72  LFSGPPMQMP---SQLSPRDREARVLRYXXXXXXXXXXXXIRYASRKAYAETRPRIKGRF 128
           L   PP   P   + L   +R++ VLRY            IRYASRKA A+ R R+KGRF
Sbjct: 170 LMGEPPWCSPCPENSLPSANRDSAVLRYKEKKKARKFEKKIRYASRKARADVRKRVKGRF 229

Query: 129 AKRTDVDFEVDQMFST 144
            K  D  ++ D +  T
Sbjct: 230 VKAGDA-YDYDPLNQT 244