Jatropha Genome Database

JcCB0216831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0216831.10 + phase: 0 /pseudo/partial
         (249 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008024001 assembled CDS                                       298   1e-81

>GSVIVT01008024001 assembled CDS
          Length = 324

 Score =  298 bits (763), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 152/245 (62%), Positives = 171/245 (69%), Gaps = 6/245 (2%)

Query: 5   MARVVKNWWSHSKTVVLIWSVCIIVSFSLLQLALKXXXXXXXXXXXXXXXXXMEQRSRLY 64
           MARV +NWWSHSKTVVLIW    ++ +  LQ  L+                  E+RS+LY
Sbjct: 1   MARV-RNWWSHSKTVVLIWLTSALLFYFGLQFVLRNSSLNYPSAVSTMSDS--ERRSKLY 57

Query: 65  DKMARDLDEKGPTFLEHGETSQSLSLSDLFILKDGSLTPVLKAANPPVRANVLYMSPEYS 124
           DKM  DL+E G  FLEHGETSQSLSLSDLF LKDG +TPVLKAA PPVRANVLY+S E+S
Sbjct: 58  DKMESDLNEHGAAFLEHGETSQSLSLSDLFTLKDGIVTPVLKAAKPPVRANVLYLSTEFS 117

Query: 125 VPISETVKHIFHPYFDQAIWFQNSSLYHFSMFHASHHILPVPXXXXXXXXXXXXXXXXXX 184
           VPISE V+ IF PYFD+ IWFQNSSLYHFSMFHASHHI PVP                  
Sbjct: 118 VPISEAVRSIFSPYFDKVIWFQNSSLYHFSMFHASHHITPVPATEVEIEGEATAVEAVAK 177

Query: 185 GLCPLKIVLDRVVLTSTGVLLGCWQVISGPDPITIRSKLRTALPHAPEKQLVKN---HVN 241
            LCPLKIVLDRV+LT TGVLLGCWQV SG DP+TIR+KLRTALP AP+ QL  N   H +
Sbjct: 178 ALCPLKIVLDRVLLTPTGVLLGCWQVASGTDPVTIRAKLRTALPRAPKNQLYDNAILHTS 237

Query: 242 FLFML 246
           F  +L
Sbjct: 238 FARLL 242