Jatropha Genome Database

JcCB0216511.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0216511.10 - phase: 0 
         (67 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01001192001 assembled CDS                                        99   6e-22
GSVIVT01018019001 assembled CDS                                        97   1e-21
GSVIVT01011899001 assembled CDS                                        79   6e-16

>GSVIVT01001192001 assembled CDS
          Length = 328

 Score = 98.6 bits (244), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 46/65 (70%), Positives = 52/65 (80%)

Query: 1  MGLESVDTSSFMSDFLQKCGGYAVIDGGFATELERHGADLNDPLWSAKCLISSPHLVRKV 60
          MG   +  SSF+SDFL + GG AVIDGG ATELERHGADLNDPLWSAKCL+SSPHL+R V
Sbjct: 1  MGHVDLQPSSFISDFLLQTGGVAVIDGGLATELERHGADLNDPLWSAKCLLSSPHLIRTV 60

Query: 61 LYSFL 65
             +L
Sbjct: 61 HLDYL 65


>GSVIVT01018019001 assembled CDS
          Length = 330

 Score = 97.4 bits (241), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 42/65 (64%), Positives = 53/65 (81%)

Query: 1  MGLESVDTSSFMSDFLQKCGGYAVIDGGFATELERHGADLNDPLWSAKCLISSPHLVRKV 60
          MG  ++ + +FM+DF+++ GGYAVIDGG ATELERHGADLNDPLWSA CLI SP L+R+V
Sbjct: 1  MGFATLHSPTFMADFIRQSGGYAVIDGGLATELERHGADLNDPLWSATCLIHSPDLIRRV 60

Query: 61 LYSFL 65
             +L
Sbjct: 61 HLDYL 65


>GSVIVT01011899001 assembled CDS
          Length = 325

 Score = 78.6 bits (192), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 44/58 (75%)

Query: 8  TSSFMSDFLQKCGGYAVIDGGFATELERHGADLNDPLWSAKCLISSPHLVRKVLYSFL 65
          TSS + D ++K GG AV+DGGFAT+LE HGA +NDPLWSA CLI  P L+++V   +L
Sbjct: 4  TSSLLEDLIEKAGGCAVVDGGFATQLEIHGATINDPLWSALCLIKDPDLIKRVHLEYL 61