Jatropha Genome Database

JcCB0215961.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0215961.30 - phase: 1 /partial
         (52 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025864001 assembled CDS                                        84   2e-17

>GSVIVT01025864001 assembled CDS
          Length = 162

 Score = 83.6 bits (205), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/53 (75%), Positives = 45/53 (84%), Gaps = 2/53 (3%)

Query: 1   DESTYTTSYNYYMHGYNESVHGYFPDQAYAT-VDDNTVHLFSEDNVHAYCTIM 52
           DESTYT+SYNYYMHGYNESVHGYFPD  Y   +DD T H+FS+DNVHA C+IM
Sbjct: 111 DESTYTSSYNYYMHGYNESVHGYFPDPPYPILIDDQTAHIFSDDNVHA-CSIM 162