Jatropha Genome Database

JcCB0215961.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0215961.20 + phase: 2 /partial
         (314 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01001119001 assembled CDS                                       508   e-144
GSVIVT01021426001 assembled CDS                                       149   1e-36
GSVIVT01025535001 assembled CDS                                       140   1e-33
GSVIVT01001046001 assembled CDS                                       139   1e-33
GSVIVT01024207001 assembled CDS                                       122   2e-28
GSVIVT01022631001 assembled CDS                                       119   2e-27
GSVIVT01028118001 assembled CDS                                       108   3e-24
GSVIVT01003253001 assembled CDS                                        99   2e-21

>GSVIVT01001119001 assembled CDS
          Length = 954

 Score =  508 bits (1308), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 252/313 (80%), Positives = 281/313 (89%)

Query: 1   VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRF 60
           VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTF+QNVELTDPI+SRF
Sbjct: 642 VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFSQNVELTDPIVSRF 701

Query: 61  DILCVVKDVVDPVADEMLAKFVVDSHFKSQPKGANIDDRSLSESQEDAQASARPFDPEIL 120
           D+LCVVKDVVDPV DEMLAKFVVDSHFKSQPKG N++D+SLS SQ+D Q SARP DPEIL
Sbjct: 702 DVLCVVKDVVDPVTDEMLAKFVVDSHFKSQPKGTNVEDKSLSNSQDDIQPSARPLDPEIL 761

Query: 121 PQDLLKKYITYAKLNVFPRLHDSDMEKLKQVYAELRRESSHGQGVPIAVRHIESMIRMSE 180
            QDLLKKY+TYAKLNVFPRLHD+D+ KL  VYAELRRESSHGQGVPIAVRHIESMIRMSE
Sbjct: 762 SQDLLKKYLTYAKLNVFPRLHDADLNKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSE 821

Query: 181 SHARMHLRQHVTEEDVDVAIRVLLNSFISTQKYGVQRALQKSFRKYITYKMDYNRMLLNL 240
           +HARMHLRQHVT+EDVD+AIRVLL+SFISTQK+GVQ+ALQKSF+KY+T+K DYN +LL L
Sbjct: 822 AHARMHLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFKKYMTFKKDYNELLLYL 881

Query: 241 LQELVNRALRFEEIITGSISGLSHIDVKVEDLRIMAEERGISDLNPFFSSTDFSAANFEL 300
           L+ LV  AL FEEI++GS SGL HIDVKVE+L+  A++  I DL PFFSST FS A+FEL
Sbjct: 882 LRGLVKDALHFEEIVSGSSSGLPHIDVKVEELQSKAQDYEIYDLKPFFSSTQFSRAHFEL 941

Query: 301 DNVRQVIKHHLPR 313
           D  R VI+H L R
Sbjct: 942 DAERGVIRHRLAR 954


>GSVIVT01021426001 assembled CDS
          Length = 776

 Score =  149 bits (377), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 88/224 (39%), Positives = 129/224 (57%), Gaps = 21/224 (9%)

Query: 1   VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRF 60
           V+IHE MEQQ+++I+KAGI  SL ARCSV+AAANPI G YD S T T+N+ L D ++SRF
Sbjct: 415 VAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRF 474

Query: 61  DILCVVKDVVDPVADEMLAKFVVDSH-FKSQPKGANIDDRSLSESQED------------ 107
           D+L +V D +D   D  +++ V+  H F+S   G    D      ++D            
Sbjct: 475 DLLFIVLDQMDADIDRQISEHVLRMHRFRSAAGGLGTLDGGSRYGKDDEADTGSSVFVKY 534

Query: 108 -----AQASARPFDPEILPQDLLKKYITYAKLNVFPRLHDSDMEKLKQVYAELRRESSH- 161
                 + + R    + L    LKKYI YAK  + P L D   +++   YAELR  +S+ 
Sbjct: 535 NRMLHGKKTERGRKRDTLTIKFLKKYIHYAKHRIQPELTDEASDQIATAYAELRNSNSNA 594

Query: 162 --GQGVPIAVRHIESMIRMSESHARMHLRQHVTEEDVDVAIRVL 203
             G  +PI  R +E++IR+S +HA+M L + V + DV+ A++VL
Sbjct: 595 KTGGTLPITARTLETIIRLSTAHAKMKLSRQVLKSDVEAALKVL 638


>GSVIVT01025535001 assembled CDS
          Length = 553

 Score =  140 bits (352), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 125/224 (55%), Gaps = 45/224 (20%)

Query: 2   SIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRFD 61
           S+ EAMEQQ +S++KAG+V SL AR SV+AAANP+GG Y+ +KT  +N++++  ++SRFD
Sbjct: 246 SLLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFD 305

Query: 62  ILCVVKDVVDPVADEMLAKFVVDSHFKSQPKGANIDDRSLSESQEDAQASARPF------ 115
           ++ ++ D  D + D+ +++ ++  H               +   E++ A+ RP+      
Sbjct: 306 LVFILLDKPDELLDKRVSEHIMSLH---------------AGCGENSPAAKRPYIAAHTV 350

Query: 116 ------------------DPE------ILPQDLLKKYITYAKLNVFPRLHDSDMEKLKQV 151
                             DP+       LP  LL+KYI YA+  VFPR+     E L++ 
Sbjct: 351 GGIDMNAKSGSLVSRLRLDPKKDMDFVPLPAPLLRKYIAYARTFVFPRMSKPAAEILQKF 410

Query: 152 YAELRRESSHGQGVPIAVRHIESMIRMSESHARMHLRQHVTEED 195
           Y  LR  S+   G PI  R +ES++R++E+ AR+ LR+ +T +D
Sbjct: 411 YLRLRDHSTSADGTPITARQLESLVRLAEARARLDLREEITAQD 454


>GSVIVT01001046001 assembled CDS
          Length = 732

 Score =  139 bits (351), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 123/222 (55%), Gaps = 27/222 (12%)

Query: 1   VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRF 60
           V+IHEAMEQQ+ISI+KAGI T L +R SV+AAANP  GRYD  KT   N++L   I+SRF
Sbjct: 455 VAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRF 514

Query: 61  DILCVVKDVVDPVADEMLAKFVVDSHFKSQPKGANIDDRSLSESQEDAQASARPFDPEIL 120
           D++ +VKD+     D+++A  ++  H  +       D R+  E                 
Sbjct: 515 DLIFIVKDIRMYSQDKIIASHIIKVHASADATSG--DTRTSKE----------------- 555

Query: 121 PQDLLKKYITYAKLNVFPRLHDSDMEKLKQVYAELRR-------ESSHGQGVPIAVRHIE 173
            ++ LK+YI Y +    PRL DS    L+  Y ++R+       E+     +PI VR +E
Sbjct: 556 -ENWLKRYIQYCRTECHPRLSDSASTMLQNNYVKIRQDMRQQANETGEAAAIPITVRQLE 614

Query: 174 SMIRMSESHARMHLRQHVTEEDVDVAIRVLLNSFISTQKYGV 215
           +++R+SE+ A+M L    TEE+V  AIR+   S +   + G+
Sbjct: 615 AIVRLSEALAKMRLSHVATEENVLEAIRLFNVSTMDAARSGI 656


>GSVIVT01024207001 assembled CDS
          Length = 834

 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/241 (33%), Positives = 122/241 (50%), Gaps = 48/241 (19%)

Query: 3   IHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRFDI 62
           +HE MEQQ++SI+KAGI+ SL AR SV+A ANP G RY+   +   N+ L   ++SRFD+
Sbjct: 551 LHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDL 610

Query: 63  LCVVKDVVDPVADEMLAKFVVDSHFKSQPKGANIDDRSLSESQEDAQASARPFDPEILPQ 122
           + ++ D  D   D  LAK +V  HF+                           +PE L Q
Sbjct: 611 IYLILDKADEQTDRRLAKHIVALHFE---------------------------NPESLEQ 643

Query: 123 DL-----LKKYITYAKLNVFPRLHDSDMEKLKQVYAELRRE----SSHGQGVPIAVRHIE 173
           D+     L  Y++YA+ ++ P+L D   E+L + Y E+RR      S  + +    R IE
Sbjct: 644 DVLDLPTLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIE 703

Query: 174 SMIRMSESHARMHLRQHVTEEDVDVAIRVLLNSFISTQKYGVQRALQKSFRKYITYKMDY 233
           S+IR+ E+ AR+   + V + DV  A R+L            + ALQ+S   + T  +D 
Sbjct: 704 SLIRLGEALARIRFSEWVEKRDVMEAFRLL------------EVALQQSATDHSTGTIDM 751

Query: 234 N 234
           +
Sbjct: 752 D 752


>GSVIVT01022631001 assembled CDS
          Length = 665

 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/264 (33%), Positives = 139/264 (52%), Gaps = 28/264 (10%)

Query: 2   SIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRFD 61
           +IHEAMEQQ+ISI+KAG+VT+L  R  V  A NP  G YD  ++ + N  L+ P++SRFD
Sbjct: 426 TIHEAMEQQTISIAKAGLVTTLNTRTIVFGATNP-KGHYDPGQSLSVNTTLSGPLLSRFD 484

Query: 62  ILCVVKDVVDPVADEMLAKFVVDSHFKSQPKGANIDDRSLSESQEDAQASARPFD-PEIL 120
           I+ V+ D  +P  D      VV SH  ++P              E+++   R  +   I 
Sbjct: 485 IVLVLLDTKNPEWDA-----VVSSHILAEP--------------EESENGKRDENLANIW 525

Query: 121 PQDLLKKYITYAKLNVFPRLHDSDMEKLKQVYAELRRESSHGQGVPIAVRHIESMIRMSE 180
           P  LL++YI + K   F  +   + EK+   Y +L+R S+        VR +ES+IR+++
Sbjct: 526 PLPLLRRYIHFVK-GYFKPVLTKEAEKVISSYYQLQRRSATHNAARTTVRMLESLIRLAQ 584

Query: 181 SHARMHLRQHVTEEDVDVAIRVLLNSFISTQKY-GVQRALQKSFRKYITYKMDYNRMLLN 239
           +HAR+  R  VT  D   AI  + +S  ++     V  AL  +F +      +Y +    
Sbjct: 585 AHARLMFRNEVTRLDAITAILCIESSMTTSAIVDSVGNALHSNFTE--NPDQEYAKQERL 642

Query: 240 LLQELVNRALRFEEIIT--GSISG 261
           +L++L +    F +II+  GSI+G
Sbjct: 643 ILEKL-SSIDEFPDIISIHGSITG 665


>GSVIVT01028118001 assembled CDS
          Length = 718

 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 112/206 (54%), Gaps = 26/206 (12%)

Query: 1   VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRF 60
            +IHE MEQQ++SI+KAGI TSL AR +V+AAANP  GRYD  +T  +N+ L   ++SRF
Sbjct: 451 TAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRF 510

Query: 61  DILCVVKDVVDPVADEMLAKFVVDSHFKSQPKGANIDDRSLSESQEDAQASARPFDPEIL 120
           D+L ++ D  D  +D  +A+ VV  H                +++E       P +P I 
Sbjct: 511 DLLWLILDRADMDSDLEMARHVVYVH----------------KNKESPALGFTPLEPSI- 553

Query: 121 PQDLLKKYITYAKLNVFPRLHDSDMEKLKQVYAELRRESSHGQGVP---IAVRHIESMIR 177
               L+ YI+ A+  + P +     E +   Y+ +R+E +     P     VR + S++R
Sbjct: 554 ----LRAYISAAR-RISPCVPKELEEYIASAYSGIRQEEAKSSS-PHSYTTVRTLLSILR 607

Query: 178 MSESHARMHLRQHVTEEDVDVAIRVL 203
           +S + AR+   + V + DVD A+R++
Sbjct: 608 ISAALARLRFSETVAQSDVDEALRLM 633


>GSVIVT01003253001 assembled CDS
          Length = 822

 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 91/178 (51%), Gaps = 25/178 (14%)

Query: 1   VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRF 60
           V+IHEAMEQQ+ISI+KAGI  +L AR S++AAANP GGRYD SK    NV L   I+SRF
Sbjct: 506 VAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRF 565

Query: 61  DILCVVKDVVDPVADEMLAKFVVDSHFKSQPKGANIDDRSLSESQEDAQASARPFDPEIL 120
           D++ V+ D  D   D  +A  +V  H K                 E+A A A        
Sbjct: 566 DLVYVMIDDPDDQIDYHIAHHIVRVHQK----------------HEEALAPA-------F 602

Query: 121 PQDLLKKYITYAKLNVFPRLHDSDMEKLKQVYAELRRESSHGQGVPIAVRHIESMIRM 178
               LK+Y  YAK  + P+L     + L   Y  LRR  +   G  +  RH+   +R+
Sbjct: 603 TTAQLKRYFAYAK-TLKPKLSSEARKLLVDSYVALRRGDTT-PGSRVQPRHVRVAVRL 658