Jatropha Genome Database

JcCB0214691.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0214691.10 + phase: 0 /partial
         (351 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032211001 assembled CDS                                       613   e-176

>GSVIVT01032211001 assembled CDS
          Length = 758

 Score =  613 bits (1581), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 295/323 (91%), Positives = 314/323 (97%)

Query: 1   MRGRLIRGGSSKAKTVLLGGLKDHLKTIRRSRRIVFVGCGTSYNAALAARPILEELSGVP 60
           MRGRLIRGGSSK+KTVLLGGLKDHLKTIRRSRRIVF+GCGTSYNAALAARPILEELSG+P
Sbjct: 411 MRGRLIRGGSSKSKTVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSGIP 470

Query: 61  VTMEIASDLVDRQGPIYREDTAVFVSQSGETADTLHALEYALENGALCVGITNTVGSAIA 120
           VTME+ASDL+DRQGPIYREDTAVFVSQSGETADTLHALEYALENGALCVGITNTVGSAIA
Sbjct: 471 VTMEVASDLLDRQGPIYREDTAVFVSQSGETADTLHALEYALENGALCVGITNTVGSAIA 530

Query: 121 RHTHCGVHINAGAEIGVASTKAYTSQMVVMAMLALAIGGDAISSQAKRDAIIDGLFDLPN 180
           R+THCGVHINAG EIGVASTKAYTSQ+VVMAMLALAIG D  SS  +R++IIDGLFDLPN
Sbjct: 531 RNTHCGVHINAGCEIGVASTKAYTSQIVVMAMLALAIGDDTSSSLGRRESIIDGLFDLPN 590

Query: 181 KVREVLKLDQEMKDLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGMLAGEM 240
           KVREVLKLDQEMKDLAK LIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEG++AGEM
Sbjct: 591 KVREVLKLDQEMKDLAKLLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGIIAGEM 650

Query: 241 KHGPLALVDENLPIIVIATHDACFSKQQSVIQQLHARKGRLIVMCSKGDAASVCPGQSCR 300
           KHGPLALVDENLPI+VIAT DACFSKQQSVIQQLHARKGRLI+MCSKGD+A+VCPG SCR
Sbjct: 651 KHGPLALVDENLPIVVIATRDACFSKQQSVIQQLHARKGRLIMMCSKGDSAAVCPGGSCR 710

Query: 301 VIEVPQVEDCLQPVVNIVPLQVL 323
           VIEVPQVEDCLQPV+N+VPLQ+L
Sbjct: 711 VIEVPQVEDCLQPVINVVPLQLL 733