Jatropha Genome Database
- JcCB0213661.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0213661.20 - phase: 2 /pseudo/partial
(396 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01028153001 assembled CDS 91 1e-18
GSVIVT01010362001 assembled CDS 85 5e-17
GSVIVT01000554001 assembled CDS 76 2e-14
GSVIVT01021163001 assembled CDS 74 9e-14
GSVIVT01028054001 assembled CDS 65 5e-11
GSVIVT01003434001 assembled CDS 64 9e-11
GSVIVT01029863001 assembled CDS 51 1e-06
>GSVIVT01028153001 assembled CDS
Length = 687
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 65/113 (57%)
Query: 126 MDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVPEIQRTNLGNVVX 185
+++L V P+S+ +A Q +GRA RT C+ LYTE ++ N++ P PEI R+NL N V
Sbjct: 342 VESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVL 401
Query: 186 XXXXXXXXXXXXFDFMDPPPQDNILNSMYQLWVLSALNNVGRLTDLGWKMVEF 238
FDFMDPP + ++ ++ L L AL++ G LT LG M EF
Sbjct: 402 TLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTKLGEIMSEF 454
>GSVIVT01010362001 assembled CDS
Length = 704
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 94/230 (40%), Gaps = 30/230 (13%)
Query: 115 CKMKVYNHRMGMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVPE 174
K + YN GM +L V +S+ A+Q AGRA RT CY LY Y ++ + VPE
Sbjct: 305 VKQRQYNPLTGMYSLDVVQISKVQANQRAGRAGRTRPGKCYRLYPSMVYHDDFLDVTVPE 364
Query: 175 IQRTNLGNVV--XXXXXXXXXXXXXFDFMDPPPQDNILNSMYQLWVLSALNNVGRLTDLG 232
IQR++L V FDF+D P +++ +++ QL+++ A++ G +T +G
Sbjct: 365 IQRSSLAGSVLYLKSLDLPDIDILKFDFLDSPSSESLQDALRQLYLIDAIDENGSITSVG 424
Query: 233 WKMVEFHQTLHLLRCCXWESNWDAXMRFXRLXXXXXXXXXXXAPKIEQRKVMLRGRXXXX 292
M E L R E+N + A + +L GR
Sbjct: 425 RTMAELPLESSLSRML-MEANECGCL----------SQALTVAAMLSAETTLLPGRSKST 473
Query: 293 XXX-----------------XXXXXVYLQWKEHQYRGDWCNDHFLHIKGL 325
++ QW + Y +WC DH L ++G+
Sbjct: 474 EKKRKHTPTDLPDGSGWGDHIQLLQIFEQWDQTDYDPNWCKDHGLQVRGM 523
>GSVIVT01000554001 assembled CDS
Length = 1408
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
Query: 114 VCKMKVYNHRMGMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVP 173
V K + YN G+++L + S+ A Q +GRA R C+ LY ES + ++ S P
Sbjct: 1068 VVKARTYNAHTGIESLDIVKTSKAQALQRSGRAGRERPGKCFRLYPESEF-GQLADSTEP 1126
Query: 174 EIQRTNLGNVVXXXXXXXXXXXXXFDFMDPPPQDNILNSMYQLWVLSALNNVGRLTD 230
EI+R NL NV+ FDF++ P + I+ S+ QL++L A+ + +L+D
Sbjct: 1127 EIKRCNLSNVILQLKALGVDDIIGFDFLEKPSRMAIVKSLEQLFLLGAITDDSKLSD 1183
>GSVIVT01021163001 assembled CDS
Length = 694
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 1/125 (0%)
Query: 115 CKMKVYNHRMGMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVPE 174
K + YN ++ L V P+S+ +A Q AGRA R CY LYTE ++NEM +PE
Sbjct: 360 SKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVNEMSAHAIPE 419
Query: 175 IQRTNLGNVVXXXXXXXXXXXXXFDFMDPPPQDNILNSMYQLWVLSALNNVGRLTD-LGW 233
+QR+NL + V FD+ P + ++ ++ L+ L L++ +LT LG+
Sbjct: 420 MQRSNLVSCVIQLKALGIDNILGFDWPASPSPEAMIRALEVLYSLGVLDDDAKLTSPLGF 479
Query: 234 KMVEF 238
++ E
Sbjct: 480 QVAEI 484
>GSVIVT01028054001 assembled CDS
Length = 1098
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 61/124 (49%), Gaps = 2/124 (1%)
Query: 116 KMKVYNHRMGMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPS-PVPE 174
K+K Y+H GM+ +V +S+ +A Q AGRA RT CY LY+ SA N ++P + E
Sbjct: 602 KVKNYDHSNGMETYEVQWISKASAAQRAGRAGRTGPGHCYRLYS-SAVFNNILPDFSMAE 660
Query: 175 IQRTNLGNVVXXXXXXXXXXXXXFDFMDPPPQDNILNSMYQLWVLSALNNVGRLTDLGWK 234
I + + V+ F F PP + + L L ALN+ GRLT LG
Sbjct: 661 ILKVPVEGVILLMKSMDIDKVANFPFPTPPDAIALAEAERCLKALEALNSKGRLTPLGKA 720
Query: 235 MVEF 238
M +
Sbjct: 721 MAHY 724
>GSVIVT01003434001 assembled CDS
Length = 1988
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 125 GMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVPEIQRTNLGNVV 184
GM+ L+V +S+++A+Q AGRA RT+ CY LY++ + M P PEI+R +LG V
Sbjct: 583 GMNVLRVCSISQSSANQRAGRAGRTEPGRCYRLYSKDDF-ELMPPHQEPEIRRVHLGVAV 641
Query: 185 XXXXXXXXXXXXXFDFMDPPPQDNI---LNSMYQLWVLSALNNVGRLTDLGWKMVEF 238
FDF+D P I + ++ QL ++ N+ LT+ G +V+
Sbjct: 642 LRILALGIKNLEHFDFVDAPSGQAIDMAIRNLLQLGAVTLTNDFYDLTEEGRCLVKL 698
>GSVIVT01029863001 assembled CDS
Length = 803
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/30 (73%), Positives = 23/30 (76%)
Query: 152 ATCYMLYTESAYLNEMVPSPVPEIQRTNLG 181
CY LYTESAY NEM P+ VPEIQR NLG
Sbjct: 532 GKCYRLYTESAYRNEMSPTSVPEIQRINLG 561