Jatropha Genome Database

JcCB0213661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0213661.10 + phase: 0 /partial
         (125 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026762001 assembled CDS                                        67   2e-12

>GSVIVT01026762001 assembled CDS
          Length = 222

 Score = 66.6 bits (161), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/47 (63%), Positives = 38/47 (80%)

Query: 2   DLHEWLLKHKGIFNVKTDIKTQNLTVEGTIESDKLLAYIRKKVHRNA 48
           DL   LL+   I++VKTD+K Q LTVEGT+ESDKL+ YIRKKVH++A
Sbjct: 126 DLRRKLLRRTDIYSVKTDMKAQKLTVEGTVESDKLIGYIRKKVHKHA 172