Jatropha Genome Database

JcCB0212851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0212851.10 - phase: 1 /pseudo
         (237 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025529001 assembled CDS                                       376   e-105

>GSVIVT01025529001 assembled CDS
          Length = 470

 Score =  376 bits (965), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/218 (85%), Positives = 207/218 (94%)

Query: 1   GVTAAKGFKAAGIYGGLRAQGNKPDLALVTCDVDAAAAGAFTTNMVAAAPVLYCKNALDI 60
           GVTAAKGFKAAG+YGGLRA+G KPDLALV CDVDA +AGAFTTN+VAAAPV+YCKNALD+
Sbjct: 67  GVTAAKGFKAAGLYGGLRAKGEKPDLALVACDVDAISAGAFTTNVVAAAPVVYCKNALDM 126

Query: 61  SKTARAVLINAGQANAATGDAGYQDVLECADALAKVLNLKQEEVLIESTGVIGHRIKKEA 120
           SKTARAVLINAGQANAATGDAGYQDV+ECA+ALAK+L ++ EEVLIESTGVIGHRIKK+A
Sbjct: 127 SKTARAVLINAGQANAATGDAGYQDVIECANALAKLLQMRPEEVLIESTGVIGHRIKKDA 186

Query: 121 LLNALPELVNSLTSSLEGAGSAAVAITTTDLVSKSVAIESQVGDMSVRVGGMAKGSGMIH 180
           LLN+LP+LV+SL+SS EGA SAAVAITTTDLVSKSVAIES+VG  ++RVGGMAKGSGMIH
Sbjct: 187 LLNSLPKLVSSLSSSTEGADSAAVAITTTDLVSKSVAIESEVGGTNIRVGGMAKGSGMIH 246

Query: 181 PNMATMLGVITTDALVEADVWRKMVLIAVNRSFNQITV 218
           PNMATMLGV+TTDALV +DVWRKMV IAVNRSFNQITV
Sbjct: 247 PNMATMLGVVTTDALVASDVWRKMVQIAVNRSFNQITV 284