Jatropha Genome Database

JcCB0212401.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0212401.10 - phase: 0 
         (155 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035161001 assembled CDS                                       207   1e-54
GSVIVT01029831001 assembled CDS                                       175   9e-45
GSVIVT01015855001 assembled CDS                                        69   7e-13
GSVIVT01012136001 assembled CDS                                        66   6e-12

>GSVIVT01035161001 assembled CDS
          Length = 362

 Score =  207 bits (528), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 104/141 (73%), Positives = 113/141 (80%), Gaps = 8/141 (5%)

Query: 11  RKLALVSGLKWVDEVIANSPYAITEQFMNTLFNEHKIDYIIHGDDPCLLPDGTDAYALAK 70
            +L LVSGLKWVDEVIAN+PYAITEQFM+TLFNEHKIDYIIHGDDPCLLPDGTDAYALAK
Sbjct: 49  ERLVLVSGLKWVDEVIANAPYAITEQFMDTLFNEHKIDYIIHGDDPCLLPDGTDAYALAK 108

Query: 71  RAGRYKQIKRTEGVSSTDIVGRILS-VDDPKVCEAHDDKLPLPRDACKAN-------QSS 122
           +AGRYKQIKRTEGVSSTDIVGRILS + D K  E H+    L  +    N       QS 
Sbjct: 109 KAGRYKQIKRTEGVSSTDIVGRILSYIKDTKTHEDHNGSTSLHGERDNTNEAEGEKCQSK 168

Query: 123 GAYISQFLPTSRRIVQFSNGK 143
           G ++S FLPTSRRIVQFSNGK
Sbjct: 169 GLHLSHFLPTSRRIVQFSNGK 189


>GSVIVT01029831001 assembled CDS
          Length = 362

 Score =  175 bits (443), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 89/141 (63%), Positives = 106/141 (75%), Gaps = 10/141 (7%)

Query: 12  KLALVSGLKWVDEVIANSPYAITEQFMNTLFNEHKIDYIIHGDDPCLLPDGTDAYALAKR 71
           ++ +VSG+KWVDEVI ++PYAITE FM  LF+E+ IDYIIHGDDPC+LPDGTDAYALAK+
Sbjct: 50  RMIMVSGVKWVDEVIPDAPYAITEDFMKKLFDEYNIDYIIHGDDPCILPDGTDAYALAKK 109

Query: 72  AGRYKQIKRTEGVSSTDIVGR-ILSVDDPKVCEAHDDKLPLPRDACKAN--------QSS 122
           AGRYKQIKRTEGVSSTDIVGR +L V +  + ++H+    L R     +          S
Sbjct: 110 AGRYKQIKRTEGVSSTDIVGRMLLCVRERSLSDSHNHS-SLQRQFSHGHSQKFEDGGSGS 168

Query: 123 GAYISQFLPTSRRIVQFSNGK 143
           G  IS FLPTSRRIVQFSNGK
Sbjct: 169 GTRISHFLPTSRRIVQFSNGK 189


>GSVIVT01015855001 assembled CDS
          Length = 305

 Score = 69.3 bits (168), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 6/91 (6%)

Query: 6   INNNFRKLALVSGLKWVDEVIANSPYAITEQFMNTLFNEHKIDYIIHGDDPCLLPDGT-- 63
           + N   +   +   KWVDEVI ++P+ +T++F++    +HKIDY+ H   P     G   
Sbjct: 76  VMNEVERYESLRHCKWVDEVIPDAPWVLTQEFLD----KHKIDYVAHDSLPYADASGAGN 131

Query: 64  DAYALAKRAGRYKQIKRTEGVSSTDIVGRIL 94
           D Y   K  G++K+ KRT+G+S++DI+ RI+
Sbjct: 132 DVYEFVKSIGKFKETKRTDGISTSDIIMRIV 162


>GSVIVT01012136001 assembled CDS
          Length = 289

 Score = 66.2 bits (160), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 51/77 (66%), Gaps = 6/77 (7%)

Query: 20  KWVDEVIANSPYAITEQFMNTLFNEHKIDYIIHGDDPCLLPDGT--DAYALAKRAGRYKQ 77
           +WVDEVI ++P+ +T++F++    +H+IDY+ H   P     G   D Y   K  G++K+
Sbjct: 74  RWVDEVIPDAPWVLTQEFID----KHEIDYVAHDSLPYADASGAGKDVYEFVKSIGKFKE 129

Query: 78  IKRTEGVSSTDIVGRIL 94
            KRT+G+S++DI+ RI+
Sbjct: 130 TKRTDGISTSDIIMRIV 146