Jatropha Genome Database

JcCB0212191.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0212191.10 + phase: 0 /partial
         (109 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033859001 assembled CDS                                       119   2e-28
GSVIVT01000981001 assembled CDS                                       112   4e-26

>GSVIVT01033859001 assembled CDS
          Length = 107

 Score =  119 bits (299), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 73/86 (84%)

Query: 1  MDTSKPAIFVNGGLLPMHLRKRVRTVVQVLGSDRGSVIGKTTDDHQLVVKGTPPSAALTN 60
          MDTS PA+FVN  LL M++ ++VR V+QV+ S+ G +IGK+TD+ QLV+KGTPPS  LT 
Sbjct: 1  MDTSNPAVFVNMELLRMYVGRKVRAVIQVIRSEGGVIIGKSTDEQQLVIKGTPPSFPLTT 60

Query: 61 FVEVIGIAESDKSIQAEIWTSFGDTF 86
          FVEVIGIA+S++SI+AEIWT+FGDTF
Sbjct: 61 FVEVIGIADSNQSIRAEIWTNFGDTF 86


>GSVIVT01000981001 assembled CDS
          Length = 161

 Score =  112 bits (280), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 69/86 (80%)

Query: 1   MDTSKPAIFVNGGLLPMHLRKRVRTVVQVLGSDRGSVIGKTTDDHQLVVKGTPPSAALTN 60
           MDTS PA+FVN  LL  ++ ++VR VVQV+G D G V GK+ DD QL++KG+PPS  + N
Sbjct: 55  MDTSSPAVFVNAELLRTYVGRKVRAVVQVIGFDGGVVTGKSVDDQQLIIKGSPPSVPVMN 114

Query: 61  FVEVIGIAESDKSIQAEIWTSFGDTF 86
           ++EVIGIA+S++SI+AEIWT+FG TF
Sbjct: 115 YIEVIGIADSNQSIRAEIWTNFGSTF 140