Jatropha Genome Database

JcCB0211371.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0211371.10 + phase: 0 /partial
         (180 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022569001 assembled CDS                                       148   2e-36
GSVIVT01016350001 assembled CDS                                       139   9e-34
GSVIVT01035860001 assembled CDS                                       126   4e-30

>GSVIVT01022569001 assembled CDS
          Length = 715

 Score =  148 bits (373), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 77/156 (49%), Positives = 103/156 (66%), Gaps = 13/156 (8%)

Query: 8   KFENLKGAMSFDDIWEDISSITEEYDH----KVYIVSWNDHFFVLKADLDAYYIIDSLGE 63
           +F+ L+GAMSFD IW++IS    E       +VYIVSWNDHFFVL  + +AYYIID+LGE
Sbjct: 528 RFDFLQGAMSFDSIWDEISHAGSESPSNSGPQVYIVSWNDHFFVLIVEPEAYYIIDTLGE 587

Query: 64  RLFEGCNQAYILKFDESTIMYEKVRKEIDSEEQTAAEKGKDEQDTQEIICKGKECCKEFI 123
           RL+EGC+QAYILKF   T +Y     ++ S  Q + EK ++     E++C+GKE CKE+I
Sbjct: 588 RLYEGCDQAYILKFGRDTKLY-----KLSSVPQPSDEKPEE----AEVVCQGKESCKEYI 638

Query: 124 KRFLAAIPXXXXXXXXXXRKVSTFSLLQRLQIDFHY 159
           K FLAAIP            +++  L +RLQI+FHY
Sbjct: 639 KNFLAAIPIRELQADIKKGLMASTPLHRRLQIEFHY 674


>GSVIVT01016350001 assembled CDS
          Length = 380

 Score =  139 bits (349), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 69/154 (44%), Positives = 93/154 (60%), Gaps = 20/154 (12%)

Query: 6   PEKFENLKGAMSFDDIWEDISSITEEYDHKVYIVSWNDHFFVLKADLDAYYIIDSLGERL 65
           P + E LKGAMSFD IWE++       + ++YIVSWNDHFFVLK +++  YIID+LGERL
Sbjct: 233 PNRLEFLKGAMSFDSIWEELGRRERTIEEEIYIVSWNDHFFVLKVEVNVIYIIDTLGERL 292

Query: 66  FEGCNQAYILKFDESTIMYEKVRKEIDSEEQTAAEKGKDEQDTQEIICKGKECCKEFIKR 125
           FEGCN+A+ILKF+                     E+ +DE   +E++C+GK  CKEFIK 
Sbjct: 293 FEGCNKAFILKFN--------------------IEREEDETSHRELVCQGKSTCKEFIKG 332

Query: 126 FLAAIPXXXXXXXXXXRKVSTFSLLQRLQIDFHY 159
           FLAA+P          + +    L   LQI+FH+
Sbjct: 333 FLAALPLRELQADIEKKIIGEAPLHHLLQIEFHH 366


>GSVIVT01035860001 assembled CDS
          Length = 526

 Score =  126 bits (317), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 57/95 (60%), Positives = 74/95 (77%)

Query: 2   AIFNPEKFENLKGAMSFDDIWEDISSITEEYDHKVYIVSWNDHFFVLKADLDAYYIIDSL 61
             F+PEKF +L+G +SF+ IW +I+   E+ + +VYIVSWNDHFFVLK +  A YIIDSL
Sbjct: 424 GFFSPEKFVSLEGTVSFEGIWNEINGQNEDQEPRVYIVSWNDHFFVLKVEAQACYIIDSL 483

Query: 62  GERLFEGCNQAYILKFDESTIMYEKVRKEIDSEEQ 96
           G+RLFEGCNQAYILKFD S +MY K +K+  +EE+
Sbjct: 484 GKRLFEGCNQAYILKFDGSAVMYGKAKKDGGTEER 518