Jatropha Genome Database

JcCB0209291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0209291.10 + phase: 0 /partial
         (166 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01023441001 assembled CDS                                       240   2e-64

>GSVIVT01023441001 assembled CDS
          Length = 393

 Score =  240 bits (612), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 127/168 (75%), Positives = 140/168 (83%), Gaps = 12/168 (7%)

Query: 1   MLFQVGGQGTRPTFFEMAAAQQLPASLRAALTYSIGVLALRRPLLHKVLDYEDEFFALLM 60
           MLFQVGGQG RPTFFEM+AAQQLPASLRAALTYSIGVLALRRP LH+VLDYEDEFFALLM
Sbjct: 1   MLFQVGGQGARPTFFEMSAAQQLPASLRAALTYSIGVLALRRPFLHRVLDYEDEFFALLM 60

Query: 61  LVLETHSLRITDASFSESLYGLRRRAVKIKAK---NLS-SGEAIELSGLQKHQRVLSVAF 116
           LVLE+HSLR TDASFSESLYGLRRRAV+I+ K    LS S + I  SGL+K+Q+ LSV F
Sbjct: 61  LVLESHSLRTTDASFSESLYGLRRRAVRIRVKKDNTLSDSSDVIHHSGLEKYQKRLSVLF 120

Query: 117 LVVLPYFKSKLHSIYNKERDARLQSSLWG------DDAIFENFDSHRG 158
           LVVLPYFKSKLHS+YNKER+A LQ+SLWG      DDA  + F   RG
Sbjct: 121 LVVLPYFKSKLHSVYNKEREATLQASLWGHGDERFDDA--DYFSEERG 166