Jatropha Genome Database

JcCB0207431.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0207431.10 + phase: 2 /partial
         (135 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024874001 assembled CDS                                       137   2e-33
GSVIVT01016483001 assembled CDS                                       136   2e-33
GSVIVT01006068001 assembled CDS                                       133   3e-32

>GSVIVT01024874001 assembled CDS
          Length = 271

 Score =  137 bits (344), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 63/136 (46%), Positives = 88/136 (64%), Gaps = 5/136 (3%)

Query: 1   LLHSKWGYEKIHHVHHQYTAPIGLAAPYAHWAEILILGFPAFLGPALVPGHIITYWLWFI 60
           +LH+KW Y+ +H VHH+Y  P GL + YAH AEIL LGF   +GPA+   H++T WLW +
Sbjct: 129 VLHTKWLYKHVHCVHHEYATPFGLTSEYAHPAEILFLGFATIVGPAITGPHLMTLWLWMV 188

Query: 61  LRQIEAIETHSGYDIARSFTKYIPFYGGAEYHDYHHCVGAQSQSNFASIFTYCDYIYGTD 120
           LR +E +E H GY    S + ++P YGGA++HDYHH +      N++S F Y D+I+GTD
Sbjct: 189 LRVLETVEAHCGYHFPWSLSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDWIFGTD 248

Query: 121 K-----VSKTRNEIEV 131
           K      +   NE+EV
Sbjct: 249 KGYRRLKALKSNEVEV 264


>GSVIVT01016483001 assembled CDS
          Length = 273

 Score =  136 bits (343), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 60/121 (49%), Positives = 80/121 (66%)

Query: 1   LLHSKWGYEKIHHVHHQYTAPIGLAAPYAHWAEILILGFPAFLGPALVPGHIITYWLWFI 60
           +LH+KW Y+ +H +HH+Y  P GL + YAH AEIL LGF   LGPA+   H+ T WLW +
Sbjct: 129 ILHTKWLYKHVHSIHHEYATPFGLTSEYAHPAEILFLGFATILGPAITGPHLFTLWLWMV 188

Query: 61  LRQIEAIETHSGYDIARSFTKYIPFYGGAEYHDYHHCVGAQSQSNFASIFTYCDYIYGTD 120
           +R +E +E H GY    S + +IP YGGA +HDYHH V      N++S F Y D+I+GTD
Sbjct: 189 VRVLETVEAHCGYHFPFSLSNFIPLYGGANFHDYHHRVLYTKSGNYSSTFVYMDWIFGTD 248

Query: 121 K 121
           K
Sbjct: 249 K 249


>GSVIVT01006068001 assembled CDS
          Length = 221

 Score =  133 bits (334), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 60/72 (83%), Positives = 65/72 (90%)

Query: 2   LHSKWGYEKIHHVHHQYTAPIGLAAPYAHWAEILILGFPAFLGPALVPGHIITYWLWFIL 61
           LH KWGYEKIH VHH+YTAPIG AAPYAHWAEILILG P+FLGPA+ PGHIIT+WLW  L
Sbjct: 148 LHCKWGYEKIHRVHHEYTAPIGFAAPYAHWAEILILGIPSFLGPAMAPGHIITFWLWIAL 207

Query: 62  RQIEAIETHSGY 73
           RQIEAI+THSGY
Sbjct: 208 RQIEAIDTHSGY 219