Jatropha Genome Database

JcCB0207251.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0207251.30 + phase: 0 /partial
         (64 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018715001 assembled CDS                                       129   2e-31

>GSVIVT01018715001 assembled CDS
          Length = 1171

 Score =  129 bits (325), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/64 (98%), Positives = 64/64 (100%)

Query: 1    VDAALDLSHTQNIGRMIKAHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTVAA 60
            VDAALDLSHTQNIGRMIK+HFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTVAA
Sbjct: 1108 VDAALDLSHTQNIGRMIKSHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTVAA 1167

Query: 61   KQNK 64
            KQNK
Sbjct: 1168 KQNK 1171