Jatropha Genome Database

JcCB0207251.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0207251.10 + phase: 0 /pseudo/partial
         (292 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018715001 assembled CDS                                       304   3e-83
GSVIVT01018697001 assembled CDS                                        67   1e-11

>GSVIVT01018715001 assembled CDS
          Length = 1171

 Score =  304 bits (778), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 155/209 (74%), Positives = 175/209 (83%)

Query: 84   LKERASLESQLGSLRMQINHLNLEVEEQKSKVASVRNTHDEAHSELELIRLKMKECDSQI 143
            ++ERASLESQL  LR QI+ L  EV++ K+KV+SV+N HD+A SEL LIRLKMKECDSQI
Sbjct: 823  IEERASLESQLTCLRGQIDSLTSEVDQLKNKVSSVKNNHDQAQSELNLIRLKMKECDSQI 882

Query: 144  NSFLKEQQKLQQKVSETKLERKKLENEVKRMEMQQKDCSTKVDKLIEKHAWIASEKQLFG 203
            +  LKEQ+KLQ K+SE  +ERKKLENEVKRMEM+QKDCS+KV+KLIEKHAWIASEKQLFG
Sbjct: 883  SCILKEQEKLQHKLSEMNIERKKLENEVKRMEMEQKDCSSKVEKLIEKHAWIASEKQLFG 942

Query: 204  RSGTDYDFMSRDPKKAREELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIE 263
            RSGTDYDF  RDP KAR EL+KLQ EQSGLEKRVNKKVMAMFEKAEDEYN+L+SKK+IIE
Sbjct: 943  RSGTDYDFACRDPSKARAELDKLQTEQSGLEKRVNKKVMAMFEKAEDEYNELISKKSIIE 1002

Query: 264  NDKSKIKKVIXXXXXXXXXXXXVTWVKVN 292
            NDKSKIK VI            VTW KVN
Sbjct: 1003 NDKSKIKMVIEELDEKKKETLKVTWTKVN 1031


>GSVIVT01018697001 assembled CDS
          Length = 53

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/45 (75%), Positives = 39/45 (86%)

Query: 136 MKECDSQINSFLKEQQKLQQKVSETKLERKKLENEVKRMEMQQKD 180
           MKECDSQI+  LKEQ+KLQ K+SE  + RKKLENEVKRMEM+QKD
Sbjct: 1   MKECDSQISYILKEQEKLQHKLSEMNIGRKKLENEVKRMEMEQKD 45